Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC3O75056 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.61■□□□□ 0.25
SDC3O75056 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
SDC3O75056 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.61■□□□□ 0.25
SDC3O75056 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC3O75056 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC3O75056 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC3O75056 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.61■□□□□ 0.25
SDC3O75056 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.61■□□□□ 0.25
SDC3O75056 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC3O75056 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC3O75056 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC3O75056 HMGA1P7-201ENST00000406908 502 ntBASIC16.61■□□□□ 0.25
SDC3O75056 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.61■□□□□ 0.25
SDC3O75056 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC3O75056 RN7SL589P-201ENST00000481268 310 ntBASIC16.61■□□□□ 0.25
SDC3O75056 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.61■□□□□ 0.25
SDC3O75056 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.61■□□□□ 0.25
SDC3O75056 AC243562.1-201ENST00000560672 389 ntBASIC16.61■□□□□ 0.25
SDC3O75056 RARRES2P8-201ENST00000566335 367 ntBASIC16.61■□□□□ 0.25
SDC3O75056 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.61■□□□□ 0.25
SDC3O75056 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.61■□□□□ 0.25
SDC3O75056 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.61■□□□□ 0.25
SDC3O75056 AL096865.1-201ENST00000606796 927 ntBASIC16.61■□□□□ 0.25
SDC3O75056 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.61■□□□□ 0.25
SDC3O75056 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC3O75056 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.61■□□□□ 0.25
SDC3O75056 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC3O75056 AL133373.2-201ENST00000623187 2828 ntBASIC16.61■□□□□ 0.25
SDC3O75056 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SDC3O75056 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC3O75056 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC3O75056 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC3O75056 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SDC3O75056 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SDC3O75056 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SDC3O75056 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.6■□□□□ 0.25
SDC3O75056 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC3O75056 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC3O75056 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC3O75056 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC3O75056 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC3O75056 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.6■□□□□ 0.25
SDC3O75056 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.6■□□□□ 0.25
SDC3O75056 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC3O75056 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC3O75056 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC3O75056 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SDC3O75056 AL035633.1-201ENST00000406139 838 ntBASIC16.6■□□□□ 0.25
SDC3O75056 FAM58DP-201ENST00000428076 619 ntBASIC16.6■□□□□ 0.25
SDC3O75056 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.6■□□□□ 0.25
SDC3O75056 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.6■□□□□ 0.25
SDC3O75056 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.6■□□□□ 0.25
SDC3O75056 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.6■□□□□ 0.25
SDC3O75056 AC069335.1-201ENST00000489972 472 ntBASIC16.6■□□□□ 0.25
SDC3O75056 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
SDC3O75056 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.6■□□□□ 0.25
SDC3O75056 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.6■□□□□ 0.25
SDC3O75056 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.6■□□□□ 0.25
SDC3O75056 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.6■□□□□ 0.25
SDC3O75056 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.6■□□□□ 0.25
SDC3O75056 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SDC3O75056 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
SDC3O75056 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC3O75056 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SDC3O75056 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC3O75056 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.6■□□□□ 0.25
SDC3O75056 AC012569.1-201ENST00000591191 1524 ntBASIC16.6■□□□□ 0.25
SDC3O75056 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC3O75056 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SDC3O75056 AC135050.7-201ENST00000624508 2218 ntBASIC16.6■□□□□ 0.25
SDC3O75056 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.59■□□□□ 0.25
SDC3O75056 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.59■□□□□ 0.25
SDC3O75056 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC3O75056 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC3O75056 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC3O75056 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC3O75056 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SDC3O75056 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SDC3O75056 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC3O75056 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SDC3O75056 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC3O75056 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.59■□□□□ 0.25
SDC3O75056 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.59■□□□□ 0.25
SDC3O75056 AC092474.2-201ENST00000424288 719 ntBASIC16.59■□□□□ 0.25
SDC3O75056 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.59■□□□□ 0.25
SDC3O75056 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.59■□□□□ 0.25
SDC3O75056 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.59■□□□□ 0.25
SDC3O75056 AC093214.1-201ENST00000511688 1107 ntBASIC16.59■□□□□ 0.25
SDC3O75056 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.59■□□□□ 0.25
SDC3O75056 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.59■□□□□ 0.25
SDC3O75056 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SDC3O75056 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.59■□□□□ 0.25
SDC3O75056 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.59■□□□□ 0.25
SDC3O75056 AL390955.2-201ENST00000603032 514 ntBASIC16.59■□□□□ 0.25
SDC3O75056 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.59■□□□□ 0.25
SDC3O75056 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.59■□□□□ 0.25
SDC3O75056 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SDC3O75056 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC3O75056 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms