Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 SLC25A39P2-201ENST00000537614 270 ntBASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 AC008761.3-201ENST00000624803 892 ntBASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.43
LIMD1Q9UGP4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIMD1Q9UGP4 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIMD1Q9UGP4 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.77■□□□□ 0.43
LIMD1Q9UGP4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
LIMD1Q9UGP4 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIMD1Q9UGP4 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.77■□□□□ 0.43
LIMD1Q9UGP4 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
LIMD1Q9UGP4 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIMD1Q9UGP4 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.43
LIMD1Q9UGP4 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIMD1Q9UGP4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 TREML5P-201ENST00000421694 576 ntBASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 GPS2P2-201ENST00000430745 888 ntBASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 IGHV3-42-201ENST00000520410 361 ntBASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 DUX4L17-201ENST00000557360 1267 ntBASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 AL135744.1-201ENST00000565098 629 ntBASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIMD1Q9UGP4 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 AC087163.2-201ENST00000457299 853 ntBASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 AL512638.1-201ENST00000457493 794 ntBASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 AL390754.1-201ENST00000619088 582 ntBASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 AL645728.2-201ENST00000641974 660 ntBASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIMD1Q9UGP4 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 AC008677.1-201ENST00000519230 1561 ntBASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms