Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 PIN1-206ENST00000587625 878 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 AC034105.1-201ENST00000563488 319 ntBASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 TERC-201ENST00000602385 541 ntBASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC20.33■□□□□ 0.85
CHMP4CQ96CF2 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP4CQ96CF2 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
CHMP4CQ96CF2 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP4CQ96CF2 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
CHMP4CQ96CF2 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP4CQ96CF2 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 AC073621.1-201ENST00000392730 636 ntBASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 ZNF259P1-201ENST00000407656 1365 ntBASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4CQ96CF2 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 AC140113.2-201ENST00000604370 208 ntBASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 Z83851.2-201ENST00000609564 659 ntBASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms