Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 AL391825.1-201ENST00000457671 1364 ntBASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 BANF1P1-201ENST00000553684 263 ntBASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 LINC00304-203ENST00000565008 1864 ntBASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 LINC00895-201ENST00000629028 1637 ntBASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM43Q96BQ3 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 SPDYE19P-201ENST00000338590 713 ntBASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 KRT18P34-201ENST00000488218 1270 ntBASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 SNX12-206ENST00000622259 661 ntTSL 5 BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TRIM43Q96BQ3 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 AC021097.1-201ENST00000607902 574 ntBASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 AL133215.2-201ENST00000609242 977 ntBASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 AL033527.4-201ENST00000641026 673 ntBASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM43Q96BQ3 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.27■□□□□ 0.52
TRIM43Q96BQ3 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM43Q96BQ3 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM43Q96BQ3 AL023806.1-201ENST00000603994 1649 ntBASIC18.27■□□□□ 0.52
TRIM43Q96BQ3 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM43Q96BQ3 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
TRIM43Q96BQ3 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM43Q96BQ3 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM43Q96BQ3 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM43Q96BQ3 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM43Q96BQ3 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.27■□□□□ 0.52
TRIM43Q96BQ3 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.27■□□□□ 0.52
TRIM43Q96BQ3 DOC2GP-202ENST00000514950 1163 ntBASIC18.27■□□□□ 0.52
TRIM43Q96BQ3 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.27■□□□□ 0.52
TRIM43Q96BQ3 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms