Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 RIN3-211ENST00000557762 517 ntTSL 3 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AC005593.1-201ENST00000624894 515 ntBASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AL022326.1-202ENST00000641533 845 ntBASIC5.3□□□□□ -1.56
SYNE1Q8NF91 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 AC073592.3-201ENST00000625118 1834 ntBASIC5.3□□□□□ -1.56
SYNE1Q8NF91 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
SYNE1Q8NF91 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 MKNK2P1-201ENST00000437526 628 ntBASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 TCAP-202ENST00000578283 583 ntTSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 ZNF706-209ENST00000520347 3502 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AC073592.5-201ENST00000624854 528 ntBASIC5.29□□□□□ -1.56
SYNE1Q8NF91 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 PDPK2P-202ENST00000562415 1191 ntBASIC5.29□□□□□ -1.56
SYNE1Q8NF91 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 LINC00628-201ENST00000628516 1289 ntBASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 PCDHB18P-201ENST00000524813 2368 ntBASIC5.29□□□□□ -1.56
SYNE1Q8NF91 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms