Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.34■□□□□ 0.37
USP39Q53GS9 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
USP39Q53GS9 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.34■□□□□ 0.37
USP39Q53GS9 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.34■□□□□ 0.37
USP39Q53GS9 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
USP39Q53GS9 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP39Q53GS9 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP39Q53GS9 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.33■□□□□ 0.37
USP39Q53GS9 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP39Q53GS9 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
USP39Q53GS9 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
USP39Q53GS9 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP39Q53GS9 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
USP39Q53GS9 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP39Q53GS9 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP39Q53GS9 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP39Q53GS9 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
USP39Q53GS9 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
USP39Q53GS9 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
USP39Q53GS9 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
USP39Q53GS9 ACTG1P4-201ENST00000425123 1122 ntBASIC17.33■□□□□ 0.36
USP39Q53GS9 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.33■□□□□ 0.36
USP39Q53GS9 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.33■□□□□ 0.36
USP39Q53GS9 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.33■□□□□ 0.36
USP39Q53GS9 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.33■□□□□ 0.36
USP39Q53GS9 AC112191.1-201ENST00000523689 701 ntBASIC17.33■□□□□ 0.36
USP39Q53GS9 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.33■□□□□ 0.36
USP39Q53GS9 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.33■□□□□ 0.36
USP39Q53GS9 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.33■□□□□ 0.36
USP39Q53GS9 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP39Q53GS9 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.33■□□□□ 0.36
USP39Q53GS9 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
USP39Q53GS9 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP39Q53GS9 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.33■□□□□ 0.36
USP39Q53GS9 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
USP39Q53GS9 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.33■□□□□ 0.36
USP39Q53GS9 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
USP39Q53GS9 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
USP39Q53GS9 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP39Q53GS9 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP39Q53GS9 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP39Q53GS9 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.32■□□□□ 0.36
USP39Q53GS9 AL121761.2-201ENST00000598007 1648 ntBASIC17.32■□□□□ 0.36
USP39Q53GS9 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
USP39Q53GS9 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.32■□□□□ 0.36
USP39Q53GS9 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.32■□□□□ 0.36
USP39Q53GS9 AC092474.2-201ENST00000424288 719 ntBASIC17.32■□□□□ 0.36
USP39Q53GS9 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
USP39Q53GS9 FAM185BP-201ENST00000443595 716 ntBASIC17.32■□□□□ 0.36
USP39Q53GS9 BCRP1-201ENST00000444246 691 ntBASIC17.32■□□□□ 0.36
USP39Q53GS9 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.32■□□□□ 0.36
USP39Q53GS9 COX20P2-201ENST00000452636 358 ntBASIC17.32■□□□□ 0.36
USP39Q53GS9 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.32■□□□□ 0.36
USP39Q53GS9 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
USP39Q53GS9 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.32■□□□□ 0.36
USP39Q53GS9 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
USP39Q53GS9 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.32■□□□□ 0.36
USP39Q53GS9 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.32■□□□□ 0.36
USP39Q53GS9 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
USP39Q53GS9 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.32■□□□□ 0.36
USP39Q53GS9 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
USP39Q53GS9 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP39Q53GS9 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
USP39Q53GS9 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP39Q53GS9 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
USP39Q53GS9 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP39Q53GS9 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP39Q53GS9 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP39Q53GS9 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP39Q53GS9 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.31■□□□□ 0.36
USP39Q53GS9 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP39Q53GS9 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
USP39Q53GS9 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.31■□□□□ 0.36
USP39Q53GS9 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP39Q53GS9 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP39Q53GS9 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP39Q53GS9 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP39Q53GS9 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP39Q53GS9 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
USP39Q53GS9 AL513480.1-201ENST00000451731 511 ntBASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms