Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
ABCA4P78363 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 FALEC-201ENST00000416894 566 ntTSL 3 BASIC14.64□□□□□ -0.07
ABCA4P78363 GPS2P2-201ENST00000430745 888 ntBASIC14.64□□□□□ -0.07
ABCA4P78363 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCA4P78363 TERF1P3-201ENST00000505638 1227 ntBASIC14.64□□□□□ -0.07
ABCA4P78363 INO80E-210ENST00000567705 880 ntTSL 3 BASIC14.64□□□□□ -0.07
ABCA4P78363 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCA4P78363 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCA4P78363 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCA4P78363 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCA4P78363 AL133373.2-201ENST00000623187 2828 ntBASIC14.64□□□□□ -0.07
ABCA4P78363 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCA4P78363 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC14.63□□□□□ -0.07
ABCA4P78363 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
ABCA4P78363 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
ABCA4P78363 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.63□□□□□ -0.07
ABCA4P78363 IGHV3-71-201ENST00000523324 359 ntBASIC14.63□□□□□ -0.07
ABCA4P78363 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.63□□□□□ -0.07
ABCA4P78363 CR383656.12-201ENST00000549567 513 ntBASIC14.63□□□□□ -0.07
ABCA4P78363 LINC02560-201ENST00000596379 459 ntBASIC14.63□□□□□ -0.07
ABCA4P78363 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
ABCA4P78363 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
ABCA4P78363 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
ABCA4P78363 AL138781.2-201ENST00000617896 1843 ntBASIC14.63□□□□□ -0.07
ABCA4P78363 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
ABCA4P78363 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
ABCA4P78363 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
ABCA4P78363 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC14.63□□□□□ -0.07
ABCA4P78363 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC14.63□□□□□ -0.07
ABCA4P78363 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
ABCA4P78363 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.63□□□□□ -0.07
ABCA4P78363 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.63□□□□□ -0.07
ABCA4P78363 AC005237.2-201ENST00000434368 219 ntBASIC14.63□□□□□ -0.07
ABCA4P78363 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.63□□□□□ -0.07
ABCA4P78363 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.63□□□□□ -0.07
ABCA4P78363 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.63□□□□□ -0.07
ABCA4P78363 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.63□□□□□ -0.07
ABCA4P78363 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.63□□□□□ -0.07
ABCA4P78363 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
ABCA4P78363 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
ABCA4P78363 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
ABCA4P78363 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC14.62□□□□□ -0.07
ABCA4P78363 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC14.62□□□□□ -0.07
ABCA4P78363 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
ABCA4P78363 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC14.62□□□□□ -0.07
ABCA4P78363 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC14.62□□□□□ -0.07
ABCA4P78363 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
ABCA4P78363 OR8S1-201ENST00000310194 1080 ntBASIC14.62□□□□□ -0.07
ABCA4P78363 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 AL671277.1-201ENST00000429656 993 ntBASIC14.62□□□□□ -0.07
ABCA4P78363 AP000842.3-202ENST00000569238 1080 ntBASIC14.62□□□□□ -0.07
ABCA4P78363 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.62□□□□□ -0.07
ABCA4P78363 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
ABCA4P78363 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC14.62□□□□□ -0.07
ABCA4P78363 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
ABCA4P78363 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
ABCA4P78363 AC007613.1-201ENST00000572811 2597 ntBASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms