Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PEX3P56589 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PEX3P56589 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.76■□□□□ 0.59
PEX3P56589 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
PEX3P56589 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PEX3P56589 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PEX3P56589 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.76■□□□□ 0.59
PEX3P56589 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PEX3P56589 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.76■□□□□ 0.59
PEX3P56589 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.76■□□□□ 0.59
PEX3P56589 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
PEX3P56589 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PEX3P56589 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PEX3P56589 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PEX3P56589 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PEX3P56589 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PEX3P56589 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
PEX3P56589 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PEX3P56589 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.75■□□□□ 0.59
PEX3P56589 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.75■□□□□ 0.59
PEX3P56589 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.75■□□□□ 0.59
PEX3P56589 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.75■□□□□ 0.59
PEX3P56589 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.75■□□□□ 0.59
PEX3P56589 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.75■□□□□ 0.59
PEX3P56589 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.75■□□□□ 0.59
PEX3P56589 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
PEX3P56589 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.75■□□□□ 0.59
PEX3P56589 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PEX3P56589 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.75■□□□□ 0.59
PEX3P56589 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.75■□□□□ 0.59
PEX3P56589 AC080080.1-201ENST00000625121 2420 ntBASIC18.75■□□□□ 0.59
PEX3P56589 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.75■□□□□ 0.59
PEX3P56589 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.75■□□□□ 0.59
PEX3P56589 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PEX3P56589 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PEX3P56589 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.75■□□□□ 0.59
PEX3P56589 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
PEX3P56589 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.75■□□□□ 0.59
PEX3P56589 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PEX3P56589 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 AC129492.6-201ENST00000611383 1305 ntBASIC18.74■□□□□ 0.59
PEX3P56589 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.74■□□□□ 0.59
PEX3P56589 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
PEX3P56589 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
PEX3P56589 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
PEX3P56589 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
PEX3P56589 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.74■□□□□ 0.59
PEX3P56589 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
PEX3P56589 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.74■□□□□ 0.59
PEX3P56589 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.74■□□□□ 0.59
PEX3P56589 CXCL1P1-201ENST00000502804 216 ntBASIC18.74■□□□□ 0.59
PEX3P56589 RNA5SP416-201ENST00000516838 111 ntBASIC18.74■□□□□ 0.59
PEX3P56589 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.74■□□□□ 0.59
PEX3P56589 AC018845.2-201ENST00000568326 409 ntBASIC18.74■□□□□ 0.59
PEX3P56589 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.74■□□□□ 0.59
PEX3P56589 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
PEX3P56589 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.74■□□□□ 0.59
PEX3P56589 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
PEX3P56589 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PEX3P56589 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PEX3P56589 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PEX3P56589 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.73■□□□□ 0.59
PEX3P56589 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.73■□□□□ 0.59
PEX3P56589 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.73■□□□□ 0.59
PEX3P56589 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PEX3P56589 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PEX3P56589 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
PEX3P56589 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.73■□□□□ 0.59
PEX3P56589 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.73■□□□□ 0.59
PEX3P56589 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.73■□□□□ 0.59
PEX3P56589 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PEX3P56589 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.73■□□□□ 0.59
PEX3P56589 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.73■□□□□ 0.59
PEX3P56589 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PEX3P56589 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.73■□□□□ 0.59
PEX3P56589 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.73■□□□□ 0.59
PEX3P56589 AC010507.1-201ENST00000633895 436 ntBASIC18.73■□□□□ 0.59
PEX3P56589 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PEX3P56589 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms