Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14□□□□□ -0.17
CDX1P47902 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
CDX1P47902 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC14□□□□□ -0.17
CDX1P47902 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14□□□□□ -0.17
CDX1P47902 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14□□□□□ -0.17
CDX1P47902 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
CDX1P47902 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
CDX1P47902 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CDX1P47902 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC13.99□□□□□ -0.17
CDX1P47902 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 IGHV3-47-201ENST00000425060 335 ntBASIC13.99□□□□□ -0.17
CDX1P47902 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC13.99□□□□□ -0.17
CDX1P47902 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC13.99□□□□□ -0.17
CDX1P47902 AC111152.3-201ENST00000569699 673 ntBASIC13.99□□□□□ -0.17
CDX1P47902 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC13.99□□□□□ -0.17
CDX1P47902 AC012313.10-201ENST00000623509 926 ntBASIC13.99□□□□□ -0.17
CDX1P47902 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC13.99□□□□□ -0.17
CDX1P47902 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CDX1P47902 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
CDX1P47902 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 POR-209ENST00000439269 1858 ntTSL 2 BASIC13.99□□□□□ -0.17
CDX1P47902 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC13.99□□□□□ -0.17
CDX1P47902 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CDX1P47902 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
CDX1P47902 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC13.98□□□□□ -0.17
CDX1P47902 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
CDX1P47902 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC13.98□□□□□ -0.17
CDX1P47902 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CDX1P47902 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC13.98□□□□□ -0.17
CDX1P47902 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC13.98□□□□□ -0.17
CDX1P47902 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
CDX1P47902 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CDX1P47902 TSPY19P-201ENST00000418461 509 ntBASIC13.98□□□□□ -0.17
CDX1P47902 POM121L3P-201ENST00000419331 1163 ntBASIC13.98□□□□□ -0.17
CDX1P47902 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC13.98□□□□□ -0.17
CDX1P47902 TSPY18P-201ENST00000441642 509 ntBASIC13.98□□□□□ -0.17
CDX1P47902 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 MINOS1P3-201ENST00000457048 203 ntBASIC13.98□□□□□ -0.17
CDX1P47902 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC13.98□□□□□ -0.17
CDX1P47902 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC13.98□□□□□ -0.17
CDX1P47902 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC13.98□□□□□ -0.17
CDX1P47902 AC091304.2-201ENST00000564639 760 ntBASIC13.98□□□□□ -0.17
CDX1P47902 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CDX1P47902 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CDX1P47902 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms