Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.33■□□□□ 0.2
MSX2P35548 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.33■□□□□ 0.2
MSX2P35548 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
MSX2P35548 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.33■□□□□ 0.2
MSX2P35548 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.32■□□□□ 0.2
MSX2P35548 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
MSX2P35548 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.32■□□□□ 0.2
MSX2P35548 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.32■□□□□ 0.2
MSX2P35548 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
MSX2P35548 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
MSX2P35548 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
MSX2P35548 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
MSX2P35548 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
MSX2P35548 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 KRT18P48-201ENST00000434763 852 ntBASIC16.32■□□□□ 0.2
MSX2P35548 FRMD8P1-201ENST00000440433 1524 ntBASIC16.32■□□□□ 0.2
MSX2P35548 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.32■□□□□ 0.2
MSX2P35548 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.32■□□□□ 0.2
MSX2P35548 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.32■□□□□ 0.2
MSX2P35548 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.32■□□□□ 0.2
MSX2P35548 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.32■□□□□ 0.2
MSX2P35548 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.32■□□□□ 0.2
MSX2P35548 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
MSX2P35548 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.32■□□□□ 0.2
MSX2P35548 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.32■□□□□ 0.2
MSX2P35548 AL136038.4-201ENST00000603606 1261 ntBASIC16.32■□□□□ 0.2
MSX2P35548 AC019129.2-201ENST00000609837 1235 ntBASIC16.32■□□□□ 0.2
MSX2P35548 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.32■□□□□ 0.2
MSX2P35548 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.32■□□□□ 0.2
MSX2P35548 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.32■□□□□ 0.2
MSX2P35548 AC010947.1-201ENST00000623454 693 ntBASIC16.32■□□□□ 0.2
MSX2P35548 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
MSX2P35548 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MSX2P35548 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
MSX2P35548 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.31■□□□□ 0.2
MSX2P35548 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.31■□□□□ 0.2
MSX2P35548 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.31■□□□□ 0.2
MSX2P35548 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSX2P35548 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MSX2P35548 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
MSX2P35548 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSX2P35548 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSX2P35548 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.31■□□□□ 0.2
MSX2P35548 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
MSX2P35548 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSX2P35548 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
MSX2P35548 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.31■□□□□ 0.2
MSX2P35548 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSX2P35548 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSX2P35548 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.31■□□□□ 0.2
MSX2P35548 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.31■□□□□ 0.2
MSX2P35548 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.31■□□□□ 0.2
MSX2P35548 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MSX2P35548 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.31■□□□□ 0.2
MSX2P35548 AL355075.4-201ENST00000554988 638 ntBASIC16.31■□□□□ 0.2
MSX2P35548 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
MSX2P35548 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.31■□□□□ 0.2
MSX2P35548 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.31■□□□□ 0.2
MSX2P35548 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSX2P35548 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
MSX2P35548 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
MSX2P35548 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSX2P35548 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSX2P35548 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSX2P35548 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.31■□□□□ 0.2
MSX2P35548 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
MSX2P35548 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSX2P35548 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MSX2P35548 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms