Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.63■□□□□ 0.09
MSX1P28360 GGTLC5P-201ENST00000617623 998 ntBASIC15.63■□□□□ 0.09
MSX1P28360 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
MSX1P28360 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
MSX1P28360 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
MSX1P28360 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX1P28360 AP002414.3-201ENST00000589352 1468 ntBASIC15.63■□□□□ 0.09
MSX1P28360 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX1P28360 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
MSX1P28360 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX1P28360 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC15.63■□□□□ 0.09
MSX1P28360 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.63■□□□□ 0.09
MSX1P28360 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MSX1P28360 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MSX1P28360 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
MSX1P28360 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
MSX1P28360 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX1P28360 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX1P28360 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX1P28360 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX1P28360 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.62■□□□□ 0.09
MSX1P28360 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.62■□□□□ 0.09
MSX1P28360 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX1P28360 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.62■□□□□ 0.09
MSX1P28360 AC004967.1-201ENST00000453589 447 ntBASIC15.62■□□□□ 0.09
MSX1P28360 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.62■□□□□ 0.09
MSX1P28360 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.62■□□□□ 0.09
MSX1P28360 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.62■□□□□ 0.09
MSX1P28360 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.62■□□□□ 0.09
MSX1P28360 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.62■□□□□ 0.09
MSX1P28360 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC15.62■□□□□ 0.09
MSX1P28360 AC005593.1-201ENST00000624894 515 ntBASIC15.62■□□□□ 0.09
MSX1P28360 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.62■□□□□ 0.09
MSX1P28360 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.62■□□□□ 0.09
MSX1P28360 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.62■□□□□ 0.09
MSX1P28360 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
MSX1P28360 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.62■□□□□ 0.09
MSX1P28360 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
MSX1P28360 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.62■□□□□ 0.09
MSX1P28360 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX1P28360 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.62■□□□□ 0.09
MSX1P28360 AC006504.4-201ENST00000592118 1568 ntBASIC15.62■□□□□ 0.09
MSX1P28360 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSX1P28360 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MSX1P28360 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MSX1P28360 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.61■□□□□ 0.09
MSX1P28360 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX1P28360 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
MSX1P28360 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX1P28360 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.61■□□□□ 0.09
MSX1P28360 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX1P28360 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
MSX1P28360 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.61■□□□□ 0.09
MSX1P28360 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.61■□□□□ 0.09
MSX1P28360 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX1P28360 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX1P28360 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.61■□□□□ 0.09
MSX1P28360 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
MSX1P28360 AC108860.2-201ENST00000562760 2183 ntBASIC15.61■□□□□ 0.09
MSX1P28360 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX1P28360 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.61■□□□□ 0.09
MSX1P28360 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX1P28360 PTCHD3P3-201ENST00000403073 906 ntBASIC15.61■□□□□ 0.09
MSX1P28360 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
MSX1P28360 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.61■□□□□ 0.09
MSX1P28360 ELK2BP-201ENST00000415014 1224 ntBASIC15.61■□□□□ 0.09
MSX1P28360 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
MSX1P28360 AC004832.2-201ENST00000426397 482 ntBASIC15.61■□□□□ 0.09
MSX1P28360 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.61■□□□□ 0.09
MSX1P28360 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MSX1P28360 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.61■□□□□ 0.09
MSX1P28360 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.61■□□□□ 0.09
MSX1P28360 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
MSX1P28360 AC112482.1-201ENST00000492080 688 ntBASIC15.61■□□□□ 0.09
MSX1P28360 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX1P28360 AC002347.1-201ENST00000569543 541 ntBASIC15.61■□□□□ 0.09
MSX1P28360 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX1P28360 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.61■□□□□ 0.09
MSX1P28360 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX1P28360 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX1P28360 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
MSX1P28360 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
MSX1P28360 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSX1P28360 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSX1P28360 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSX1P28360 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX1P28360 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX1P28360 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.6■□□□□ 0.09
MSX1P28360 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.6■□□□□ 0.09
MSX1P28360 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MSX1P28360 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.6■□□□□ 0.09
MSX1P28360 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.6■□□□□ 0.09
MSX1P28360 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX1P28360 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.6■□□□□ 0.09
MSX1P28360 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.6■□□□□ 0.09
MSX1P28360 AC009947.1-201ENST00000444350 727 ntBASIC15.6■□□□□ 0.09
MSX1P28360 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MSX1P28360 RPS15P9-201ENST00000494093 319 ntBASIC15.6■□□□□ 0.09
MSX1P28360 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.6■□□□□ 0.09
MSX1P28360 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms