Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL9A1P20849 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.41■□□□□ 0.38
COL9A1P20849 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL9A1P20849 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.41■□□□□ 0.38
COL9A1P20849 APOC3-202ENST00000375345 604 ntTSL 5 BASIC17.41■□□□□ 0.38
COL9A1P20849 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
COL9A1P20849 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.41■□□□□ 0.38
COL9A1P20849 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.41■□□□□ 0.38
COL9A1P20849 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC17.41■□□□□ 0.38
COL9A1P20849 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC17.41■□□□□ 0.38
COL9A1P20849 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
COL9A1P20849 RARRES2P8-201ENST00000566335 367 ntBASIC17.41■□□□□ 0.38
COL9A1P20849 MIR4722-201ENST00000578292 60 ntBASIC17.41■□□□□ 0.38
COL9A1P20849 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL9A1P20849 TECR-220ENST00000600083 1204 ntTSL 2 BASIC17.41■□□□□ 0.38
COL9A1P20849 AC022726.2-201ENST00000634673 547 ntBASIC17.41■□□□□ 0.38
COL9A1P20849 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.41■□□□□ 0.38
COL9A1P20849 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL9A1P20849 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.41■□□□□ 0.38
COL9A1P20849 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL9A1P20849 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL9A1P20849 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
COL9A1P20849 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL9A1P20849 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL9A1P20849 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
COL9A1P20849 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL9A1P20849 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL9A1P20849 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.4■□□□□ 0.38
COL9A1P20849 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL9A1P20849 AC138028.4-201ENST00000564984 1845 ntBASIC17.4■□□□□ 0.38
COL9A1P20849 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL9A1P20849 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.4■□□□□ 0.38
COL9A1P20849 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.4■□□□□ 0.38
COL9A1P20849 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL9A1P20849 GGCT-203ENST00000409144 836 ntTSL 2 BASIC17.4■□□□□ 0.38
COL9A1P20849 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL9A1P20849 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC17.4■□□□□ 0.38
COL9A1P20849 AL355994.2-201ENST00000447882 704 ntBASIC17.4■□□□□ 0.38
COL9A1P20849 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.4■□□□□ 0.38
COL9A1P20849 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.4■□□□□ 0.38
COL9A1P20849 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL9A1P20849 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
COL9A1P20849 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.4■□□□□ 0.38
COL9A1P20849 AC008494.3-201ENST00000606615 944 ntBASIC17.4■□□□□ 0.38
COL9A1P20849 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.4■□□□□ 0.38
COL9A1P20849 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL9A1P20849 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL9A1P20849 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
COL9A1P20849 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL9A1P20849 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL9A1P20849 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL9A1P20849 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL9A1P20849 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL9A1P20849 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL9A1P20849 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL9A1P20849 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
COL9A1P20849 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.39■□□□□ 0.38
COL9A1P20849 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL9A1P20849 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL9A1P20849 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.39■□□□□ 0.37
COL9A1P20849 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL9A1P20849 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
COL9A1P20849 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL9A1P20849 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.39■□□□□ 0.37
COL9A1P20849 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL9A1P20849 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL9A1P20849 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
COL9A1P20849 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL9A1P20849 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL9A1P20849 ALG1L8P-201ENST00000533887 760 ntBASIC17.39■□□□□ 0.37
COL9A1P20849 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
COL9A1P20849 WASH4P-201ENST00000564273 1246 ntBASIC17.39■□□□□ 0.37
COL9A1P20849 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC17.39■□□□□ 0.37
COL9A1P20849 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC17.39■□□□□ 0.37
COL9A1P20849 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.39■□□□□ 0.37
COL9A1P20849 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL9A1P20849 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL9A1P20849 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.39■□□□□ 0.37
COL9A1P20849 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL9A1P20849 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL9A1P20849 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL9A1P20849 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
COL9A1P20849 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL9A1P20849 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL9A1P20849 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL9A1P20849 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL9A1P20849 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL9A1P20849 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.38■□□□□ 0.37
COL9A1P20849 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.38■□□□□ 0.37
COL9A1P20849 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
COL9A1P20849 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL9A1P20849 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL9A1P20849 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL9A1P20849 DFFBP1-201ENST00000433250 979 ntBASIC17.38■□□□□ 0.37
COL9A1P20849 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC17.38■□□□□ 0.37
COL9A1P20849 AC140658.5-201ENST00000438532 169 ntBASIC17.38■□□□□ 0.37
COL9A1P20849 SLC25A6P2-201ENST00000497974 877 ntBASIC17.38■□□□□ 0.37
COL9A1P20849 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.38■□□□□ 0.37
COL9A1P20849 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.38■□□□□ 0.37
COL9A1P20849 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms