Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.06■□□□□ 0.32
XRCC1P18887 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.06■□□□□ 0.32
XRCC1P18887 STK25P1-201ENST00000585406 838 ntBASIC17.06■□□□□ 0.32
XRCC1P18887 AC008735.5-201ENST00000623544 497 ntBASIC17.06■□□□□ 0.32
XRCC1P18887 AC116407.3-201ENST00000623905 1129 ntBASIC17.06■□□□□ 0.32
XRCC1P18887 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
XRCC1P18887 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
XRCC1P18887 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
XRCC1P18887 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
XRCC1P18887 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
XRCC1P18887 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
XRCC1P18887 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
XRCC1P18887 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
XRCC1P18887 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
XRCC1P18887 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
XRCC1P18887 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
XRCC1P18887 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
XRCC1P18887 AL162727.3-201ENST00000635661 2787 ntBASIC17.06■□□□□ 0.32
XRCC1P18887 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
XRCC1P18887 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
XRCC1P18887 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
XRCC1P18887 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
XRCC1P18887 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
XRCC1P18887 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
XRCC1P18887 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
XRCC1P18887 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
XRCC1P18887 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.05■□□□□ 0.32
XRCC1P18887 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
XRCC1P18887 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.05■□□□□ 0.32
XRCC1P18887 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.05■□□□□ 0.32
XRCC1P18887 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.05■□□□□ 0.32
XRCC1P18887 LAGE3P1-201ENST00000425356 484 ntBASIC17.05■□□□□ 0.32
XRCC1P18887 SIGLEC30P-201ENST00000455569 941 ntBASIC17.05■□□□□ 0.32
XRCC1P18887 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
XRCC1P18887 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.05■□□□□ 0.32
XRCC1P18887 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.05■□□□□ 0.32
XRCC1P18887 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.05■□□□□ 0.32
XRCC1P18887 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.05■□□□□ 0.32
XRCC1P18887 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.05■□□□□ 0.32
XRCC1P18887 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.05■□□□□ 0.32
XRCC1P18887 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.05■□□□□ 0.32
XRCC1P18887 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
XRCC1P18887 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.05■□□□□ 0.32
XRCC1P18887 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
XRCC1P18887 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
XRCC1P18887 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.05■□□□□ 0.32
XRCC1P18887 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.05■□□□□ 0.32
XRCC1P18887 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.05■□□□□ 0.32
XRCC1P18887 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.05■□□□□ 0.32
XRCC1P18887 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
XRCC1P18887 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
XRCC1P18887 AC004817.3-201ENST00000602957 2129 ntBASIC17.05■□□□□ 0.32
XRCC1P18887 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.05■□□□□ 0.32
XRCC1P18887 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
XRCC1P18887 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
XRCC1P18887 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.04■□□□□ 0.32
XRCC1P18887 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
XRCC1P18887 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
XRCC1P18887 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.04■□□□□ 0.32
XRCC1P18887 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
XRCC1P18887 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
XRCC1P18887 STK19B-204ENST00000512515 211 ntBASIC17.04■□□□□ 0.32
XRCC1P18887 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.04■□□□□ 0.32
XRCC1P18887 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.04■□□□□ 0.32
XRCC1P18887 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.04■□□□□ 0.32
XRCC1P18887 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.04■□□□□ 0.32
XRCC1P18887 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.04■□□□□ 0.32
XRCC1P18887 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.04■□□□□ 0.32
XRCC1P18887 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.04■□□□□ 0.32
XRCC1P18887 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.04■□□□□ 0.32
XRCC1P18887 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.04■□□□□ 0.32
XRCC1P18887 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.04■□□□□ 0.32
XRCC1P18887 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
XRCC1P18887 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
XRCC1P18887 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
XRCC1P18887 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
XRCC1P18887 AC060834.1-201ENST00000443027 2032 ntBASIC17.03■□□□□ 0.32
XRCC1P18887 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
XRCC1P18887 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
XRCC1P18887 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
XRCC1P18887 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms