Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.53■□□□□ 0.24
HOXC4P09017 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.53■□□□□ 0.24
HOXC4P09017 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.53■□□□□ 0.24
HOXC4P09017 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.53■□□□□ 0.24
HOXC4P09017 METTL21AP1-201ENST00000438852 635 ntBASIC16.53■□□□□ 0.24
HOXC4P09017 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 AC079140.1-201ENST00000508039 487 ntBASIC16.53■□□□□ 0.24
HOXC4P09017 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.53■□□□□ 0.24
HOXC4P09017 AP002490.2-201ENST00000524791 560 ntBASIC16.53■□□□□ 0.24
HOXC4P09017 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HOXC4P09017 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.53■□□□□ 0.24
HOXC4P09017 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
HOXC4P09017 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.53■□□□□ 0.24
HOXC4P09017 AC084121.4-201ENST00000641598 221 ntBASIC16.53■□□□□ 0.24
HOXC4P09017 AF228730.8-201ENST00000642140 221 ntBASIC16.53■□□□□ 0.24
HOXC4P09017 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.53■□□□□ 0.24
HOXC4P09017 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
HOXC4P09017 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.53■□□□□ 0.24
HOXC4P09017 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HOXC4P09017 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.53■□□□□ 0.24
HOXC4P09017 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.53■□□□□ 0.24
HOXC4P09017 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC4P09017 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC4P09017 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HOXC4P09017 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.52■□□□□ 0.24
HOXC4P09017 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.52■□□□□ 0.24
HOXC4P09017 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HOXC4P09017 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC4P09017 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.52■□□□□ 0.24
HOXC4P09017 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC4P09017 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC4P09017 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HOXC4P09017 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HOXC4P09017 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC4P09017 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
HOXC4P09017 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HOXC4P09017 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC4P09017 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HOXC4P09017 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.52■□□□□ 0.24
HOXC4P09017 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC4P09017 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC4P09017 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.52■□□□□ 0.24
HOXC4P09017 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.52■□□□□ 0.24
HOXC4P09017 AL627223.1-201ENST00000416693 442 ntBASIC16.52■□□□□ 0.24
HOXC4P09017 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.52■□□□□ 0.24
HOXC4P09017 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.52■□□□□ 0.24
HOXC4P09017 AL592309.1-201ENST00000443127 649 ntBASIC16.52■□□□□ 0.24
HOXC4P09017 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC4P09017 AC023141.5-201ENST00000458585 616 ntBASIC16.52■□□□□ 0.24
HOXC4P09017 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.52■□□□□ 0.24
HOXC4P09017 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
HOXC4P09017 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.52■□□□□ 0.24
HOXC4P09017 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.52■□□□□ 0.24
HOXC4P09017 LINC01225-203ENST00000563550 1244 ntBASIC16.52■□□□□ 0.24
HOXC4P09017 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.52■□□□□ 0.24
HOXC4P09017 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.52■□□□□ 0.24
HOXC4P09017 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.52■□□□□ 0.24
HOXC4P09017 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.52■□□□□ 0.24
HOXC4P09017 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HOXC4P09017 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
HOXC4P09017 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC4P09017 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.52■□□□□ 0.23
HOXC4P09017 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
HOXC4P09017 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
HOXC4P09017 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HOXC4P09017 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
HOXC4P09017 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.23
HOXC4P09017 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HOXC4P09017 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.23
HOXC4P09017 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HOXC4P09017 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HOXC4P09017 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
HOXC4P09017 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
HOXC4P09017 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.51■□□□□ 0.23
HOXC4P09017 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 AC141586.5-201ENST00000624546 2050 ntBASIC16.51■□□□□ 0.23
HOXC4P09017 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HOXC4P09017 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.51■□□□□ 0.23
HOXC4P09017 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms