Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.32□□□□□ -0.12
ABCA1O95477 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC14.32□□□□□ -0.12
ABCA1O95477 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC14.32□□□□□ -0.12
ABCA1O95477 AC055876.3-201ENST00000431496 288 ntBASIC14.32□□□□□ -0.12
ABCA1O95477 AC067863.1-201ENST00000494933 530 ntBASIC14.32□□□□□ -0.12
ABCA1O95477 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC14.32□□□□□ -0.12
ABCA1O95477 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.32□□□□□ -0.12
ABCA1O95477 AC012645.4-201ENST00000610691 1061 ntBASIC14.32□□□□□ -0.12
ABCA1O95477 AC138649.4-201ENST00000612222 287 ntBASIC14.32□□□□□ -0.12
ABCA1O95477 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
ABCA1O95477 AC009949.1-201ENST00000623048 1830 ntBASIC14.32□□□□□ -0.12
ABCA1O95477 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
ABCA1O95477 AL121761.2-201ENST00000598007 1648 ntBASIC14.32□□□□□ -0.12
ABCA1O95477 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 AP000997.3-201ENST00000623333 2250 ntBASIC14.32□□□□□ -0.12
ABCA1O95477 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC14.32□□□□□ -0.12
ABCA1O95477 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 BX276092.7-203ENST00000637198 1536 ntBASIC14.31□□□□□ -0.12
ABCA1O95477 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC14.31□□□□□ -0.12
ABCA1O95477 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC14.31□□□□□ -0.12
ABCA1O95477 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC14.31□□□□□ -0.12
ABCA1O95477 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
ABCA1O95477 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC14.31□□□□□ -0.12
ABCA1O95477 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.31□□□□□ -0.12
ABCA1O95477 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.31□□□□□ -0.12
ABCA1O95477 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
ABCA1O95477 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.31□□□□□ -0.12
ABCA1O95477 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.31□□□□□ -0.12
ABCA1O95477 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC14.31□□□□□ -0.12
ABCA1O95477 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC14.31□□□□□ -0.12
ABCA1O95477 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC14.31□□□□□ -0.12
ABCA1O95477 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
ABCA1O95477 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC14.31□□□□□ -0.12
ABCA1O95477 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 HARS-201ENST00000307633 1780 ntTSL 2 BASIC14.31□□□□□ -0.12
ABCA1O95477 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
ABCA1O95477 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
ABCA1O95477 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
ABCA1O95477 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC14.31□□□□□ -0.12
ABCA1O95477 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
ABCA1O95477 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
ABCA1O95477 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
ABCA1O95477 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.31□□□□□ -0.12
ABCA1O95477 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.31□□□□□ -0.12
ABCA1O95477 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.31□□□□□ -0.12
ABCA1O95477 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.31□□□□□ -0.12
ABCA1O95477 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC14.31□□□□□ -0.12
ABCA1O95477 AC025678.2-201ENST00000562061 970 ntBASIC14.31□□□□□ -0.12
ABCA1O95477 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.31□□□□□ -0.12
ABCA1O95477 RN7SL204P-201ENST00000582831 262 ntBASIC14.31□□□□□ -0.12
ABCA1O95477 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
ABCA1O95477 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC14.31□□□□□ -0.12
ABCA1O95477 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.31□□□□□ -0.12
ABCA1O95477 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
ABCA1O95477 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ABCA1O95477 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA1O95477 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms