Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS4BO75351 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
VPS4BO75351 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
VPS4BO75351 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.76■□□□□ 0.27
VPS4BO75351 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS4BO75351 RNPS1P1-201ENST00000507437 918 ntBASIC16.76■□□□□ 0.27
VPS4BO75351 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.76■□□□□ 0.27
VPS4BO75351 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
VPS4BO75351 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.76■□□□□ 0.27
VPS4BO75351 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
VPS4BO75351 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS4BO75351 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
VPS4BO75351 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
VPS4BO75351 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS4BO75351 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
VPS4BO75351 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 BX842568.4-201ENST00000421222 227 ntBASIC16.75■□□□□ 0.27
VPS4BO75351 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.75■□□□□ 0.27
VPS4BO75351 IGHV3-47-201ENST00000425060 335 ntBASIC16.75■□□□□ 0.27
VPS4BO75351 MINOS1P3-201ENST00000457048 203 ntBASIC16.75■□□□□ 0.27
VPS4BO75351 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.75■□□□□ 0.27
VPS4BO75351 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.75■□□□□ 0.27
VPS4BO75351 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS4BO75351 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.75■□□□□ 0.27
VPS4BO75351 AC124864.1-201ENST00000623408 392 ntBASIC16.75■□□□□ 0.27
VPS4BO75351 EGFEM1P-202ENST00000431685 1563 ntBASIC16.75■□□□□ 0.27
VPS4BO75351 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS4BO75351 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS4BO75351 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VPS4BO75351 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS4BO75351 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VPS4BO75351 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VPS4BO75351 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
VPS4BO75351 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS4BO75351 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS4BO75351 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VPS4BO75351 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VPS4BO75351 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS4BO75351 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
VPS4BO75351 AL031284.1-201ENST00000419297 478 ntBASIC16.74■□□□□ 0.27
VPS4BO75351 POLD2P1-201ENST00000511220 997 ntBASIC16.74■□□□□ 0.27
VPS4BO75351 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
VPS4BO75351 AF238378.1-201ENST00000526806 358 ntBASIC16.74■□□□□ 0.27
VPS4BO75351 SLC25A1P1-201ENST00000528351 927 ntBASIC16.74■□□□□ 0.27
VPS4BO75351 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.74■□□□□ 0.27
VPS4BO75351 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS4BO75351 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS4BO75351 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS4BO75351 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS4BO75351 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS4BO75351 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms