Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AP000547.1-201ENST00000454360 617 ntBASIC23.51■■□□□ 1.35
MSH5O43196 SCARNA2-201ENST00000458748 420 ntBASIC23.51■■□□□ 1.35
MSH5O43196 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH5O43196 PGAM5P1-201ENST00000518923 814 ntBASIC23.51■■□□□ 1.35
MSH5O43196 AC087627.1-201ENST00000522339 993 ntTSL 3 BASIC23.51■■□□□ 1.35
MSH5O43196 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC23.51■■□□□ 1.35
MSH5O43196 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH5O43196 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH5O43196 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
MSH5O43196 AL356488.2-201ENST00000602755 427 ntBASIC23.51■■□□□ 1.35
MSH5O43196 AC025811.1-201ENST00000604312 472 ntBASIC23.51■■□□□ 1.35
MSH5O43196 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
MSH5O43196 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH5O43196 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
MSH5O43196 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH5O43196 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
MSH5O43196 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
MSH5O43196 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC23.51■■□□□ 1.35
MSH5O43196 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH5O43196 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
MSH5O43196 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
MSH5O43196 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC23.5■■□□□ 1.35
MSH5O43196 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH5O43196 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
MSH5O43196 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH5O43196 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
MSH5O43196 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC23.5■■□□□ 1.35
MSH5O43196 SPRR3-202ENST00000331860 985 ntAPPRIS P2 TSL 3 BASIC23.5■■□□□ 1.35
MSH5O43196 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC23.5■■□□□ 1.35
MSH5O43196 MED15P5-201ENST00000423150 992 ntBASIC23.5■■□□□ 1.35
MSH5O43196 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC23.5■■□□□ 1.35
MSH5O43196 HYI-AS1-201ENST00000444386 545 ntTSL 2 BASIC23.5■■□□□ 1.35
MSH5O43196 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC23.5■■□□□ 1.35
MSH5O43196 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC23.5■■□□□ 1.35
MSH5O43196 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
MSH5O43196 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC23.5■■□□□ 1.35
MSH5O43196 MTDHP3-201ENST00000594186 672 ntBASIC23.5■■□□□ 1.35
MSH5O43196 AP001160.2-201ENST00000596071 487 ntBASIC23.5■■□□□ 1.35
MSH5O43196 AC027601.4-201ENST00000611259 610 ntBASIC23.5■■□□□ 1.35
MSH5O43196 AC114341.1-201ENST00000618070 349 ntBASIC23.5■■□□□ 1.35
MSH5O43196 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
MSH5O43196 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH5O43196 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC23.5■■□□□ 1.35
MSH5O43196 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC23.5■■□□□ 1.35
MSH5O43196 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC23.5■■□□□ 1.35
MSH5O43196 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH5O43196 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
MSH5O43196 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
MSH5O43196 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC23.5■■□□□ 1.35
MSH5O43196 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH5O43196 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
MSH5O43196 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH5O43196 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC23.49■■□□□ 1.35
MSH5O43196 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
MSH5O43196 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH5O43196 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH5O43196 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH5O43196 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH5O43196 SNAI3-AS1-205ENST00000568633 2096 ntBASIC23.49■■□□□ 1.35
MSH5O43196 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC23.49■■□□□ 1.35
MSH5O43196 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC23.49■■□□□ 1.35
MSH5O43196 GTF2IP5-201ENST00000414608 731 ntBASIC23.49■■□□□ 1.35
MSH5O43196 SSR1P2-201ENST00000415208 787 ntBASIC23.49■■□□□ 1.35
MSH5O43196 MTCO3P30-201ENST00000426425 670 ntBASIC23.49■■□□□ 1.35
MSH5O43196 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC23.49■■□□□ 1.35
MSH5O43196 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC23.49■■□□□ 1.35
MSH5O43196 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH5O43196 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC23.49■■□□□ 1.35
MSH5O43196 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH5O43196 GNE-204ENST00000539208 2190 ntTSL 2 BASIC23.49■■□□□ 1.35
MSH5O43196 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
MSH5O43196 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC23.49■■□□□ 1.35
MSH5O43196 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
MSH5O43196 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
MSH5O43196 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
MSH5O43196 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC23.49■■□□□ 1.35
MSH5O43196 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC23.48■■□□□ 1.35
MSH5O43196 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH5O43196 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC23.48■■□□□ 1.35
MSH5O43196 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH5O43196 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH5O43196 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH5O43196 TFAM-201ENST00000373895 973 ntTSL 2 BASIC23.48■■□□□ 1.35
MSH5O43196 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC23.48■■□□□ 1.35
MSH5O43196 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
MSH5O43196 MTND1P27-201ENST00000451117 902 ntBASIC23.48■■□□□ 1.35
MSH5O43196 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC23.48■■□□□ 1.35
MSH5O43196 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC23.48■■□□□ 1.35
MSH5O43196 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH5O43196 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
MSH5O43196 AL355877.3-201ENST00000622820 899 ntBASIC23.48■■□□□ 1.35
MSH5O43196 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
MSH5O43196 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH5O43196 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
MSH5O43196 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH5O43196 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC23.48■■□□□ 1.35
MSH5O43196 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
MSH5O43196 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
MSH5O43196 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC23.48■■□□□ 1.35
MSH5O43196 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms