Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
MSH4O15457 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
MSH4O15457 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSH4O15457 AC080080.1-201ENST00000625121 2420 ntBASIC19.08■□□□□ 0.64
MSH4O15457 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 AC138932.1-201ENST00000534164 6830 ntBASIC19.07■□□□□ 0.64
MSH4O15457 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
MSH4O15457 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 AC074386.1-202ENST00000463561 864 ntBASIC19.07■□□□□ 0.64
MSH4O15457 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.07■□□□□ 0.64
MSH4O15457 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.07■□□□□ 0.64
MSH4O15457 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.07■□□□□ 0.64
MSH4O15457 AC091167.2-201ENST00000579581 588 ntBASIC19.07■□□□□ 0.64
MSH4O15457 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.07■□□□□ 0.64
MSH4O15457 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.07■□□□□ 0.64
MSH4O15457 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.07■□□□□ 0.64
MSH4O15457 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
MSH4O15457 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
MSH4O15457 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSH4O15457 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.06■□□□□ 0.64
MSH4O15457 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
MSH4O15457 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
MSH4O15457 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.06■□□□□ 0.64
MSH4O15457 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH4O15457 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
MSH4O15457 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH4O15457 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH4O15457 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.06■□□□□ 0.64
MSH4O15457 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
MSH4O15457 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH4O15457 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
MSH4O15457 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH4O15457 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH4O15457 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.06■□□□□ 0.64
MSH4O15457 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.06■□□□□ 0.64
MSH4O15457 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.06■□□□□ 0.64
MSH4O15457 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH4O15457 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.06■□□□□ 0.64
MSH4O15457 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.06■□□□□ 0.64
MSH4O15457 MIR4492-201ENST00000581627 80 ntBASIC19.06■□□□□ 0.64
MSH4O15457 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.06■□□□□ 0.64
MSH4O15457 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.06■□□□□ 0.64
MSH4O15457 MTDHP5-201ENST00000598980 586 ntBASIC19.06■□□□□ 0.64
MSH4O15457 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.06■□□□□ 0.64
MSH4O15457 AL645728.2-201ENST00000641974 660 ntBASIC19.06■□□□□ 0.64
MSH4O15457 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH4O15457 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH4O15457 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
MSH4O15457 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
MSH4O15457 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
MSH4O15457 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
MSH4O15457 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH4O15457 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH4O15457 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.05■□□□□ 0.64
MSH4O15457 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH4O15457 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH4O15457 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.05■□□□□ 0.64
MSH4O15457 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
MSH4O15457 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH4O15457 AC092919.2-201ENST00000623631 1645 ntBASIC19.05■□□□□ 0.64
MSH4O15457 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH4O15457 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH4O15457 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH4O15457 KRT18P13-201ENST00000400056 1290 ntBASIC19.05■□□□□ 0.64
MSH4O15457 HMGA1P7-201ENST00000406908 502 ntBASIC19.05■□□□□ 0.64
MSH4O15457 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC19.05■□□□□ 0.64
MSH4O15457 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
MSH4O15457 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
MSH4O15457 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.05■□□□□ 0.64
MSH4O15457 AC010327.4-202ENST00000591484 748 ntBASIC19.05■□□□□ 0.64
MSH4O15457 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH4O15457 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.05■□□□□ 0.64
MSH4O15457 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
MSH4O15457 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
MSH4O15457 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
MSH4O15457 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.05■□□□□ 0.64
MSH4O15457 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.05■□□□□ 0.64
MSH4O15457 AC131009.4-201ENST00000624048 1740 ntBASIC19.05■□□□□ 0.64
MSH4O15457 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
MSH4O15457 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
MSH4O15457 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.05■□□□□ 0.64
MSH4O15457 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH4O15457 AC012569.1-201ENST00000591191 1524 ntBASIC19.05■□□□□ 0.64
MSH4O15457 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.04■□□□□ 0.64
MSH4O15457 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms