Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CD7-202ENST00000578509 925 ntTSL 3 BASIC21.45■■□□□ 1.02
NPHP1O15259 AC015911.4-201ENST00000588022 1070 ntBASIC21.45■■□□□ 1.02
NPHP1O15259 AL390955.2-201ENST00000603032 514 ntBASIC21.45■■□□□ 1.02
NPHP1O15259 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 TUBB3P1-201ENST00000405796 1332 ntBASIC21.45■■□□□ 1.02
NPHP1O15259 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.45■■□□□ 1.02
NPHP1O15259 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
NPHP1O15259 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP1O15259 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP1O15259 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP1O15259 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP1O15259 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP1O15259 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP1O15259 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.44■■□□□ 1.02
NPHP1O15259 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.44■■□□□ 1.02
NPHP1O15259 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC21.44■■□□□ 1.02
NPHP1O15259 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
NPHP1O15259 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP1O15259 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
NPHP1O15259 AC125807.1-201ENST00000483097 614 ntBASIC21.44■■□□□ 1.02
NPHP1O15259 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP1O15259 IGHV3-42-201ENST00000520410 361 ntBASIC21.44■■□□□ 1.02
NPHP1O15259 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC21.44■■□□□ 1.02
NPHP1O15259 AL139327.4-201ENST00000612362 153 ntBASIC21.44■■□□□ 1.02
NPHP1O15259 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP1O15259 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP1O15259 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC21.44■■□□□ 1.02
NPHP1O15259 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP1O15259 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NPHP1O15259 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
NPHP1O15259 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC21.43■■□□□ 1.02
NPHP1O15259 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
NPHP1O15259 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
NPHP1O15259 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 CENPM-205ENST00000404067 905 ntTSL 3 BASIC21.43■■□□□ 1.02
NPHP1O15259 RBPMS2P1-201ENST00000437762 623 ntBASIC21.43■■□□□ 1.02
NPHP1O15259 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC21.43■■□□□ 1.02
NPHP1O15259 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 DUX4L17-201ENST00000557360 1267 ntBASIC21.43■■□□□ 1.02
NPHP1O15259 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC21.43■■□□□ 1.02
NPHP1O15259 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC21.43■■□□□ 1.02
NPHP1O15259 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC21.43■■□□□ 1.02
NPHP1O15259 AL161645.1-201ENST00000622716 1255 ntBASIC21.43■■□□□ 1.02
NPHP1O15259 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC21.43■■□□□ 1.02
NPHP1O15259 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
NPHP1O15259 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
NPHP1O15259 REXO1L11P-201ENST00000620964 1927 ntBASIC21.43■■□□□ 1.02
NPHP1O15259 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.43■■□□□ 1.02
NPHP1O15259 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
NPHP1O15259 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NPHP1O15259 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.43■■□□□ 1.02
NPHP1O15259 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC21.42■■□□□ 1.02
NPHP1O15259 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
NPHP1O15259 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP1O15259 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP1O15259 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC21.42■■□□□ 1.02
NPHP1O15259 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP1O15259 RPL30-202ENST00000396070 440 ntTSL 2 BASIC21.42■■□□□ 1.02
NPHP1O15259 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP1O15259 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC21.42■■□□□ 1.02
NPHP1O15259 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC21.42■■□□□ 1.02
NPHP1O15259 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC21.42■■□□□ 1.02
NPHP1O15259 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.42■■□□□ 1.02
NPHP1O15259 KLF2P3-201ENST00000451977 1087 ntBASIC21.42■■□□□ 1.02
NPHP1O15259 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
NPHP1O15259 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP1O15259 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC21.42■■□□□ 1.02
NPHP1O15259 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP1O15259 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP1O15259 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC21.42■■□□□ 1.02
NPHP1O15259 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC21.42■■□□□ 1.02
NPHP1O15259 UXT-AS1-201ENST00000590504 1525 ntBASIC21.42■■□□□ 1.02
NPHP1O15259 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC21.42■■□□□ 1.02
NPHP1O15259 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.42■■□□□ 1.02
NPHP1O15259 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC21.42■■□□□ 1.02
NPHP1O15259 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC21.42■■□□□ 1.02
NPHP1O15259 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
NPHP1O15259 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC21.41■■□□□ 1.02
NPHP1O15259 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP1O15259 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP1O15259 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms