Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 SAPCD2P3-201ENST00000455031 850 ntBASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 KATNBL1P2-201ENST00000433311 835 ntBASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 AC139887.3-201ENST00000568585 713 ntBASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 AC092068.3-201ENST00000587894 2016 ntBASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 NKILA-202ENST00000614771 2598 ntBASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17■□□□□ 0.31
VPS9D1Q9Y2B5 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 AC005915.1-201ENST00000624912 2018 ntBASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 AP002414.1-201ENST00000391405 1147 ntBASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS9D1Q9Y2B5 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms