Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 LINC01311-201ENST00000565162 1445 ntBASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 AC092850.2-201ENST00000623821 2697 ntBASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CHMP1AQ9HD42 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 AL596275.1-201ENST00000423464 877 ntBASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 AC093827.2-201ENST00000512654 315 ntBASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 SPEG-225ENST00000617028 815 ntTSL 5 BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 ANKRD20A8P-203ENST00000641373 517 ntBASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
CHMP1AQ9HD42 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 AL353692.3-201ENST00000407031 1396 ntBASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 COPE-203ENST00000351079 907 ntTSL 2 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 IGHGP-201ENST00000390555 1178 ntBASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 AL137013.1-201ENST00000432946 1228 ntBASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 HLA-F-220ENST00000434407 884 ntBASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 AC010203.1-204ENST00000548782 407 ntBASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 PC-208ENST00000529047 1607 ntTSL 3 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 TBC1D3P5-201ENST00000579401 1545 ntBASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CHMP1AQ9HD42 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 ADM-208ENST00000534464 1640 ntTSL 2 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 STARP1-201ENST00000397973 869 ntBASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 AC005104.2-201ENST00000427818 678 ntBASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 MTCL1P1-201ENST00000446207 792 ntBASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 TMED1-207ENST00000591695 809 ntTSL 5 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC14.75□□□□□ -0.05
CHMP1AQ9HD42 GPR32P1-201ENST00000601788 811 ntBASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms