Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.69■□□□□ 0.58
TRAIPQ9BWF2 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.69■□□□□ 0.58
TRAIPQ9BWF2 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.69■□□□□ 0.58
TRAIPQ9BWF2 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAIPQ9BWF2 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TRAIPQ9BWF2 AC129492.6-201ENST00000611383 1305 ntBASIC18.69■□□□□ 0.58
TRAIPQ9BWF2 PP12613-201ENST00000424958 2230 ntBASIC18.69■□□□□ 0.58
TRAIPQ9BWF2 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAIPQ9BWF2 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAIPQ9BWF2 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAIPQ9BWF2 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TRAIPQ9BWF2 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 ACTL9-202ENST00000612068 1252 ntBASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 LYSMD4-203ENST00000378904 2122 ntBASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
TRAIPQ9BWF2 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 AC012313.1-201ENST00000593393 3059 ntBASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 AC087163.2-201ENST00000457299 853 ntBASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 SLC25A6P2-201ENST00000497974 877 ntBASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAIPQ9BWF2 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 AC141586.5-201ENST00000624546 2050 ntBASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 AC009053.2-201ENST00000563701 2365 ntBASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 AL078644.1-201ENST00000609881 752 ntBASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms