Protein–RNA interactions for Protein: Q92544

TM9SF4, Transmembrane 9 superfamily member 4, humanhuman

Predictions only

Length 642 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4Q92544 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
TM9SF4Q92544 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.17■□□□□ 0.18
TM9SF4Q92544 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF4Q92544 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
TM9SF4Q92544 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.17■□□□□ 0.18
TM9SF4Q92544 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.17■□□□□ 0.18
TM9SF4Q92544 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF4Q92544 SIGLEC30P-201ENST00000455569 941 ntBASIC16.17■□□□□ 0.18
TM9SF4Q92544 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF4Q92544 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF4Q92544 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF4Q92544 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.17■□□□□ 0.18
TM9SF4Q92544 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF4Q92544 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF4Q92544 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TM9SF4Q92544 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF4Q92544 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.16■□□□□ 0.18
TM9SF4Q92544 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 AC112482.1-201ENST00000492080 688 ntBASIC16.16■□□□□ 0.18
TM9SF4Q92544 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 AP001160.2-201ENST00000596071 487 ntBASIC16.16■□□□□ 0.18
TM9SF4Q92544 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 AC055717.3-201ENST00000622967 595 ntBASIC16.16■□□□□ 0.18
TM9SF4Q92544 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF4Q92544 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TM9SF4Q92544 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.15■□□□□ 0.18
TM9SF4Q92544 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TM9SF4Q92544 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TM9SF4Q92544 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TM9SF4Q92544 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TM9SF4Q92544 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TM9SF4Q92544 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TM9SF4Q92544 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TM9SF4Q92544 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TM9SF4Q92544 AC073621.1-201ENST00000392730 636 ntBASIC16.15■□□□□ 0.18
TM9SF4Q92544 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TM9SF4Q92544 CRYGEP-201ENST00000412192 528 ntBASIC16.15■□□□□ 0.18
TM9SF4Q92544 KLF4P1-201ENST00000412782 1185 ntBASIC16.15■□□□□ 0.18
TM9SF4Q92544 RPS8P6-201ENST00000426177 609 ntBASIC16.15■□□□□ 0.18
TM9SF4Q92544 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TM9SF4Q92544 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.15■□□□□ 0.18
TM9SF4Q92544 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.15■□□□□ 0.18
TM9SF4Q92544 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.15■□□□□ 0.18
TM9SF4Q92544 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
TM9SF4Q92544 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.15■□□□□ 0.18
TM9SF4Q92544 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TM9SF4Q92544 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.15■□□□□ 0.18
TM9SF4Q92544 AL139424.1-201ENST00000607572 797 ntBASIC16.15■□□□□ 0.18
TM9SF4Q92544 AC004706.3-202ENST00000621574 984 ntBASIC16.15■□□□□ 0.18
TM9SF4Q92544 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.15■□□□□ 0.18
TM9SF4Q92544 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.15■□□□□ 0.18
TM9SF4Q92544 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
TM9SF4Q92544 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.15■□□□□ 0.18
TM9SF4Q92544 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TM9SF4Q92544 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TM9SF4Q92544 AL353593.2-201ENST00000602529 1483 ntBASIC16.15■□□□□ 0.18
TM9SF4Q92544 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms