Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 AC012569.1-201ENST00000591191 1524 ntBASIC17.07■□□□□ 0.32
HMGB4Q8WW32 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 PMS2P4-201ENST00000412466 1052 ntBASIC17.07■□□□□ 0.32
HMGB4Q8WW32 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 RBPMS2P1-201ENST00000437762 623 ntBASIC17.07■□□□□ 0.32
HMGB4Q8WW32 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 AC138761.1-201ENST00000584393 385 ntBASIC17.07■□□□□ 0.32
HMGB4Q8WW32 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB4Q8WW32 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 UXT-AS1-201ENST00000590504 1525 ntBASIC17.06■□□□□ 0.32
HMGB4Q8WW32 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 INGX-202ENST00000489074 768 ntBASIC17.06■□□□□ 0.32
HMGB4Q8WW32 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
HMGB4Q8WW32 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 AL355312.1-201ENST00000407115 2176 ntBASIC17.05■□□□□ 0.32
HMGB4Q8WW32 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 TUBB3P1-201ENST00000405796 1332 ntBASIC17.05■□□□□ 0.32
HMGB4Q8WW32 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 SPCS2P4-201ENST00000436160 681 ntBASIC17.05■□□□□ 0.32
HMGB4Q8WW32 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 AC239800.4-201ENST00000603712 296 ntBASIC17.05■□□□□ 0.32
HMGB4Q8WW32 AJ011932.1-201ENST00000621707 465 ntBASIC17.05■□□□□ 0.32
HMGB4Q8WW32 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB4Q8WW32 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms