Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 PRYP5-201ENST00000451909 266 ntBASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 OR7E14P-202ENST00000530490 1290 ntBASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 MTDHP4-201ENST00000600287 670 ntBASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 AL671883.3-201ENST00000603274 991 ntBASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 AC116407.3-201ENST00000623905 1129 ntBASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 GPR89P-201ENST00000407924 1495 ntBASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 AC092068.3-201ENST00000587894 2016 ntBASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTCHD3Q3KNS1 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 RPS2P28-201ENST00000314255 741 ntBASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 LINC00982-205ENST00000420957 435 ntBASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 AC124947.2-201ENST00000547118 1133 ntBASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 AL022326.1-202ENST00000641533 845 ntBASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD3Q3KNS1 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
PTCHD3Q3KNS1 NKILA-202ENST00000614771 2598 ntBASIC16.71■□□□□ 0.26
PTCHD3Q3KNS1 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
PTCHD3Q3KNS1 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
PTCHD3Q3KNS1 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
PTCHD3Q3KNS1 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
PTCHD3Q3KNS1 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 OR6D1P-203ENST00000641209 4860 ntBASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 AC012640.2-201ENST00000561606 901 ntBASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD3Q3KNS1 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms