Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.66■□□□□ 0.26
YBX1P67809 AL031284.1-201ENST00000419297 478 ntBASIC16.66■□□□□ 0.26
YBX1P67809 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.66■□□□□ 0.26
YBX1P67809 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.66■□□□□ 0.26
YBX1P67809 AF186996.4-201ENST00000467186 377 ntBASIC16.66■□□□□ 0.26
YBX1P67809 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.66■□□□□ 0.26
YBX1P67809 OR7E14P-202ENST00000530490 1290 ntBASIC16.66■□□□□ 0.26
YBX1P67809 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
YBX1P67809 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.66■□□□□ 0.26
YBX1P67809 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
YBX1P67809 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.66■□□□□ 0.26
YBX1P67809 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
YBX1P67809 AC107918.4-202ENST00000641623 219 ntBASIC16.66■□□□□ 0.26
YBX1P67809 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
YBX1P67809 DOC2GP-204ENST00000639052 2548 ntBASIC16.66■□□□□ 0.26
YBX1P67809 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
YBX1P67809 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
YBX1P67809 AP002414.3-201ENST00000589352 1468 ntBASIC16.66■□□□□ 0.26
YBX1P67809 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
YBX1P67809 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
YBX1P67809 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
YBX1P67809 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
YBX1P67809 AC078925.2-201ENST00000624013 1973 ntBASIC16.66■□□□□ 0.26
YBX1P67809 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.66■□□□□ 0.26
YBX1P67809 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
YBX1P67809 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.65■□□□□ 0.26
YBX1P67809 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 AC093525.9-201ENST00000624961 1746 ntBASIC16.65■□□□□ 0.26
YBX1P67809 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
YBX1P67809 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 AC006504.4-201ENST00000592118 1568 ntBASIC16.65■□□□□ 0.26
YBX1P67809 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.65■□□□□ 0.26
YBX1P67809 AC016396.2-201ENST00000562575 1417 ntBASIC16.65■□□□□ 0.26
YBX1P67809 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
YBX1P67809 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.65■□□□□ 0.26
YBX1P67809 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.65■□□□□ 0.26
YBX1P67809 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
YBX1P67809 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.65■□□□□ 0.26
YBX1P67809 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.65■□□□□ 0.26
YBX1P67809 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.65■□□□□ 0.26
YBX1P67809 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.65■□□□□ 0.26
YBX1P67809 AL773604.1-201ENST00000617417 272 ntBASIC16.65■□□□□ 0.26
YBX1P67809 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.65■□□□□ 0.26
YBX1P67809 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.65■□□□□ 0.26
YBX1P67809 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
YBX1P67809 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
YBX1P67809 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.26
YBX1P67809 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.64■□□□□ 0.26
YBX1P67809 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.64■□□□□ 0.26
YBX1P67809 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
YBX1P67809 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.64■□□□□ 0.25
YBX1P67809 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.64■□□□□ 0.25
YBX1P67809 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.64■□□□□ 0.25
YBX1P67809 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.64■□□□□ 0.25
YBX1P67809 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.64■□□□□ 0.25
YBX1P67809 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.64■□□□□ 0.25
YBX1P67809 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.64■□□□□ 0.25
YBX1P67809 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.64■□□□□ 0.25
YBX1P67809 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.64■□□□□ 0.25
YBX1P67809 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.64■□□□□ 0.25
YBX1P67809 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.64■□□□□ 0.25
YBX1P67809 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.64■□□□□ 0.25
YBX1P67809 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
YBX1P67809 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
YBX1P67809 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms