Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 TUBB7P-202ENST00000428444 1305 ntBASIC21■□□□□ 0.95
NUP98P52948 TUBB8P7-204ENST00000567960 1332 ntBASIC21■□□□□ 0.95
NUP98P52948 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21■□□□□ 0.95
NUP98P52948 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
NUP98P52948 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC21■□□□□ 0.95
NUP98P52948 AC015922.1-201ENST00000421102 1152 ntBASIC21■□□□□ 0.95
NUP98P52948 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC21■□□□□ 0.95
NUP98P52948 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC21■□□□□ 0.95
NUP98P52948 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC21■□□□□ 0.95
NUP98P52948 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NUP98P52948 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC21■□□□□ 0.95
NUP98P52948 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
NUP98P52948 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC21■□□□□ 0.95
NUP98P52948 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
NUP98P52948 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC21■□□□□ 0.95
NUP98P52948 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
NUP98P52948 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NUP98P52948 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUP98P52948 BASP1P1-201ENST00000430708 665 ntBASIC20.99■□□□□ 0.95
NUP98P52948 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC20.99■□□□□ 0.95
NUP98P52948 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC20.99■□□□□ 0.95
NUP98P52948 AC190387.1-201ENST00000551683 408 ntBASIC20.99■□□□□ 0.95
NUP98P52948 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC20.99■□□□□ 0.95
NUP98P52948 AP001350.2-201ENST00000625104 1094 ntBASIC20.99■□□□□ 0.95
NUP98P52948 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUP98P52948 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUP98P52948 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUP98P52948 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NUP98P52948 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NUP98P52948 AC021097.1-201ENST00000607902 574 ntBASIC20.99■□□□□ 0.95
NUP98P52948 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
NUP98P52948 AL035252.4-201ENST00000624174 288 ntBASIC20.99■□□□□ 0.95
NUP98P52948 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC20.99■□□□□ 0.95
NUP98P52948 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUP98P52948 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
NUP98P52948 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUP98P52948 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC20.99■□□□□ 0.95
NUP98P52948 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NUP98P52948 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC20.99■□□□□ 0.95
NUP98P52948 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUP98P52948 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NUP98P52948 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NUP98P52948 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.98■□□□□ 0.95
NUP98P52948 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NUP98P52948 AC022144.1-201ENST00000602255 1580 ntBASIC20.98■□□□□ 0.95
NUP98P52948 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20.98■□□□□ 0.95
NUP98P52948 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NUP98P52948 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC20.98■□□□□ 0.95
NUP98P52948 RARRES2P9-201ENST00000565168 469 ntBASIC20.98■□□□□ 0.95
NUP98P52948 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC20.98■□□□□ 0.95
NUP98P52948 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
NUP98P52948 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC20.98■□□□□ 0.95
NUP98P52948 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC20.98■□□□□ 0.95
NUP98P52948 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.98■□□□□ 0.95
NUP98P52948 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NUP98P52948 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
NUP98P52948 AC068880.1-201ENST00000507289 2297 ntBASIC20.98■□□□□ 0.95
NUP98P52948 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NUP98P52948 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NUP98P52948 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NUP98P52948 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.98■□□□□ 0.95
NUP98P52948 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NUP98P52948 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
NUP98P52948 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.97■□□□□ 0.95
NUP98P52948 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.97■□□□□ 0.95
NUP98P52948 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUP98P52948 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.97■□□□□ 0.95
NUP98P52948 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUP98P52948 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC20.97■□□□□ 0.95
NUP98P52948 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC20.97■□□□□ 0.95
NUP98P52948 LY6E-204ENST00000519546 971 ntTSL 2 BASIC20.97■□□□□ 0.95
NUP98P52948 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
NUP98P52948 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC20.97■□□□□ 0.95
NUP98P52948 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC20.97■□□□□ 0.95
NUP98P52948 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC20.97■□□□□ 0.95
NUP98P52948 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC20.97■□□□□ 0.95
NUP98P52948 SNX33P1-201ENST00000592116 1762 ntBASIC20.97■□□□□ 0.95
NUP98P52948 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC20.97■□□□□ 0.95
NUP98P52948 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUP98P52948 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC20.97■□□□□ 0.95
NUP98P52948 LINC02012-201ENST00000608206 1725 ntBASIC20.97■□□□□ 0.95
NUP98P52948 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUP98P52948 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
NUP98P52948 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NUP98P52948 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NUP98P52948 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.97■□□□□ 0.95
NUP98P52948 AC073439.1-201ENST00000624121 1774 ntBASIC20.97■□□□□ 0.95
NUP98P52948 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUP98P52948 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC20.97■□□□□ 0.95
NUP98P52948 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NUP98P52948 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC20.97■□□□□ 0.95
NUP98P52948 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC20.97■□□□□ 0.95
NUP98P52948 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC20.97■□□□□ 0.95
NUP98P52948 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC20.97■□□□□ 0.95
NUP98P52948 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUP98P52948 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NUP98P52948 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC20.97■□□□□ 0.95
NUP98P52948 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NUP98P52948 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NUP98P52948 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms