Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS2P33552 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS2P33552 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
CKS2P33552 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
CKS2P33552 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC12.62□□□□□ -0.39
CKS2P33552 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC12.62□□□□□ -0.39
CKS2P33552 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC12.62□□□□□ -0.39
CKS2P33552 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
CKS2P33552 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC12.62□□□□□ -0.39
CKS2P33552 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC12.62□□□□□ -0.39
CKS2P33552 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
CKS2P33552 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC12.62□□□□□ -0.39
CKS2P33552 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 CRYGFP-201ENST00000418459 633 ntBASIC12.62□□□□□ -0.39
CKS2P33552 GLI3-203ENST00000437480 451 ntTSL 2 BASIC12.62□□□□□ -0.39
CKS2P33552 FDX2-206ENST00000492239 773 ntTSL 2 BASIC12.62□□□□□ -0.39
CKS2P33552 AP003041.3-201ENST00000527151 707 ntBASIC12.62□□□□□ -0.39
CKS2P33552 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 ETFA-216ENST00000560726 942 ntTSL 3 BASIC12.62□□□□□ -0.39
CKS2P33552 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC12.62□□□□□ -0.39
CKS2P33552 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC12.62□□□□□ -0.39
CKS2P33552 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC12.62□□□□□ -0.39
CKS2P33552 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC12.62□□□□□ -0.39
CKS2P33552 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC12.62□□□□□ -0.39
CKS2P33552 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC12.62□□□□□ -0.39
CKS2P33552 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
CKS2P33552 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 MBP-202ENST00000355994 2772 ntTSL 5 BASIC12.62□□□□□ -0.39
CKS2P33552 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
CKS2P33552 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 AC024909.3-201ENST00000611513 2257 ntBASIC12.62□□□□□ -0.39
CKS2P33552 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CKS2P33552 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC12.61□□□□□ -0.39
CKS2P33552 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC12.61□□□□□ -0.39
CKS2P33552 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC12.61□□□□□ -0.39
CKS2P33552 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
CKS2P33552 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
CKS2P33552 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CKS2P33552 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC12.61□□□□□ -0.39
CKS2P33552 PARL-206ENST00000435888 1098 ntTSL 5 BASIC12.61□□□□□ -0.39
CKS2P33552 RNA5SP413-201ENST00000516373 109 ntBASIC12.61□□□□□ -0.39
CKS2P33552 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC12.61□□□□□ -0.39
CKS2P33552 GXYLT1P5-201ENST00000614548 1189 ntBASIC12.61□□□□□ -0.39
CKS2P33552 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC12.61□□□□□ -0.39
CKS2P33552 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
CKS2P33552 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC12.61□□□□□ -0.39
CKS2P33552 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC12.61□□□□□ -0.39
CKS2P33552 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC12.61□□□□□ -0.39
CKS2P33552 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC12.61□□□□□ -0.39
CKS2P33552 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CKS2P33552 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CKS2P33552 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CKS2P33552 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
CKS2P33552 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CKS2P33552 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CKS2P33552 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC12.6□□□□□ -0.39
CKS2P33552 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CKS2P33552 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms