Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.59■□□□□ 0.41
HMGA1P17096 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.59■□□□□ 0.41
HMGA1P17096 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.59■□□□□ 0.41
HMGA1P17096 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.59■□□□□ 0.41
HMGA1P17096 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 PMS2P4-201ENST00000412466 1052 ntBASIC17.59■□□□□ 0.41
HMGA1P17096 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.59■□□□□ 0.41
HMGA1P17096 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.59■□□□□ 0.41
HMGA1P17096 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.59■□□□□ 0.41
HMGA1P17096 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.59■□□□□ 0.41
HMGA1P17096 CYP2A7P1-201ENST00000595391 815 ntBASIC17.59■□□□□ 0.41
HMGA1P17096 AP001350.2-201ENST00000625104 1094 ntBASIC17.59■□□□□ 0.41
HMGA1P17096 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.59■□□□□ 0.41
HMGA1P17096 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
HMGA1P17096 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.59■□□□□ 0.41
HMGA1P17096 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
HMGA1P17096 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.59■□□□□ 0.41
HMGA1P17096 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.59■□□□□ 0.41
HMGA1P17096 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
HMGA1P17096 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGA1P17096 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
HMGA1P17096 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.58■□□□□ 0.41
HMGA1P17096 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
HMGA1P17096 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
HMGA1P17096 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGA1P17096 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.58■□□□□ 0.41
HMGA1P17096 WASH6P-202ENST00000359512 1437 ntBASIC17.58■□□□□ 0.41
HMGA1P17096 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.58■□□□□ 0.41
HMGA1P17096 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGA1P17096 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGA1P17096 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGA1P17096 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.58■□□□□ 0.4
HMGA1P17096 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGA1P17096 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.58■□□□□ 0.4
HMGA1P17096 GPS2P2-201ENST00000430745 888 ntBASIC17.58■□□□□ 0.4
HMGA1P17096 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
HMGA1P17096 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.58■□□□□ 0.4
HMGA1P17096 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
HMGA1P17096 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGA1P17096 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGA1P17096 AC025678.2-201ENST00000562061 970 ntBASIC17.58■□□□□ 0.4
HMGA1P17096 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGA1P17096 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.58■□□□□ 0.4
HMGA1P17096 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGA1P17096 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGA1P17096 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.58■□□□□ 0.4
HMGA1P17096 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGA1P17096 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGA1P17096 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGA1P17096 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGA1P17096 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGA1P17096 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
HMGA1P17096 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGA1P17096 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HMGA1P17096 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGA1P17096 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HMGA1P17096 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGA1P17096 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGA1P17096 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGA1P17096 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HMGA1P17096 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGA1P17096 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGA1P17096 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HMGA1P17096 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HMGA1P17096 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.57■□□□□ 0.4
HMGA1P17096 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGA1P17096 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGA1P17096 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.57■□□□□ 0.4
HMGA1P17096 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.57■□□□□ 0.4
HMGA1P17096 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGA1P17096 AC084121.4-201ENST00000641598 221 ntBASIC17.57■□□□□ 0.4
HMGA1P17096 AF228730.8-201ENST00000642140 221 ntBASIC17.57■□□□□ 0.4
HMGA1P17096 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGA1P17096 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGA1P17096 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGA1P17096 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
HMGA1P17096 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HMGA1P17096 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGA1P17096 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HMGA1P17096 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGA1P17096 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGA1P17096 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGA1P17096 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGA1P17096 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms