Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
HOXC4P09017 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
HOXC4P09017 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HOXC4P09017 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.55■□□□□ 0.24
HOXC4P09017 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.55■□□□□ 0.24
HOXC4P09017 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
HOXC4P09017 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
HOXC4P09017 KRT8P48-201ENST00000515599 1220 ntBASIC16.55■□□□□ 0.24
HOXC4P09017 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
HOXC4P09017 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.55■□□□□ 0.24
HOXC4P09017 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.55■□□□□ 0.24
HOXC4P09017 AC243562.1-201ENST00000560672 389 ntBASIC16.55■□□□□ 0.24
HOXC4P09017 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.55■□□□□ 0.24
HOXC4P09017 AC027612.4-201ENST00000605371 583 ntBASIC16.55■□□□□ 0.24
HOXC4P09017 AC021097.1-201ENST00000607902 574 ntBASIC16.55■□□□□ 0.24
HOXC4P09017 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.55■□□□□ 0.24
HOXC4P09017 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.55■□□□□ 0.24
HOXC4P09017 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.55■□□□□ 0.24
HOXC4P09017 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
HOXC4P09017 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.55■□□□□ 0.24
HOXC4P09017 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
HOXC4P09017 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
HOXC4P09017 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HOXC4P09017 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HOXC4P09017 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
HOXC4P09017 AC018470.1-201ENST00000624790 3129 ntBASIC16.54■□□□□ 0.24
HOXC4P09017 WASH6P-202ENST00000359512 1437 ntBASIC16.54■□□□□ 0.24
HOXC4P09017 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.54■□□□□ 0.24
HOXC4P09017 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
HOXC4P09017 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
HOXC4P09017 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.54■□□□□ 0.24
HOXC4P09017 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
HOXC4P09017 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.54■□□□□ 0.24
HOXC4P09017 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.54■□□□□ 0.24
HOXC4P09017 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.54■□□□□ 0.24
HOXC4P09017 TIMM8BP1-201ENST00000452384 211 ntBASIC16.54■□□□□ 0.24
HOXC4P09017 HLA-J-203ENST00000494367 1087 ntBASIC16.54■□□□□ 0.24
HOXC4P09017 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.54■□□□□ 0.24
HOXC4P09017 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.54■□□□□ 0.24
HOXC4P09017 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
HOXC4P09017 KRT8P23-201ENST00000560090 1207 ntBASIC16.54■□□□□ 0.24
HOXC4P09017 AL135744.1-201ENST00000565098 629 ntBASIC16.54■□□□□ 0.24
HOXC4P09017 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.54■□□□□ 0.24
HOXC4P09017 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
HOXC4P09017 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.54■□□□□ 0.24
HOXC4P09017 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.54■□□□□ 0.24
HOXC4P09017 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.54■□□□□ 0.24
HOXC4P09017 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.54■□□□□ 0.24
HOXC4P09017 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
HOXC4P09017 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC4P09017 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.53■□□□□ 0.24
HOXC4P09017 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.53■□□□□ 0.24
HOXC4P09017 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HOXC4P09017 PP12613-201ENST00000424958 2230 ntBASIC16.53■□□□□ 0.24
HOXC4P09017 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC4P09017 AC092053.1-201ENST00000605787 1936 ntBASIC16.53■□□□□ 0.24
HOXC4P09017 AC006277.1-201ENST00000624348 1610 ntBASIC16.53■□□□□ 0.24
HOXC4P09017 LINC00895-201ENST00000629028 1637 ntBASIC16.53■□□□□ 0.24
HOXC4P09017 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
HOXC4P09017 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms