Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.21■□□□□ 0.03
CNOT4O95628 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNOT4O95628 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNOT4O95628 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CNOT4O95628 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.21■□□□□ 0.03
CNOT4O95628 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNOT4O95628 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.21■□□□□ 0.03
CNOT4O95628 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC15.21■□□□□ 0.03
CNOT4O95628 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNOT4O95628 AC104109.2-201ENST00000602919 1418 ntBASIC15.21■□□□□ 0.03
CNOT4O95628 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNOT4O95628 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNOT4O95628 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CNOT4O95628 ELK2BP-201ENST00000415014 1224 ntBASIC15.21■□□□□ 0.03
CNOT4O95628 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.21■□□□□ 0.03
CNOT4O95628 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.21■□□□□ 0.03
CNOT4O95628 AL591424.1-201ENST00000442569 1213 ntBASIC15.21■□□□□ 0.03
CNOT4O95628 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.21■□□□□ 0.03
CNOT4O95628 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.21■□□□□ 0.03
CNOT4O95628 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.21■□□□□ 0.03
CNOT4O95628 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CNOT4O95628 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.21■□□□□ 0.03
CNOT4O95628 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNOT4O95628 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.21■□□□□ 0.03
CNOT4O95628 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
CNOT4O95628 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CNOT4O95628 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
CNOT4O95628 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CNOT4O95628 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CNOT4O95628 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
CNOT4O95628 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 AC006504.4-201ENST00000592118 1568 ntBASIC15.2■□□□□ 0.02
CNOT4O95628 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.2■□□□□ 0.02
CNOT4O95628 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.2■□□□□ 0.02
CNOT4O95628 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.2■□□□□ 0.02
CNOT4O95628 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.2■□□□□ 0.02
CNOT4O95628 RPS15P9-201ENST00000494093 319 ntBASIC15.2■□□□□ 0.02
CNOT4O95628 RNA5SP415-201ENST00000517246 115 ntBASIC15.2■□□□□ 0.02
CNOT4O95628 IGHV3-65-201ENST00000523210 341 ntBASIC15.2■□□□□ 0.02
CNOT4O95628 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CNOT4O95628 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.2■□□□□ 0.02
CNOT4O95628 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CNOT4O95628 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CNOT4O95628 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CNOT4O95628 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC15.2■□□□□ 0.02
CNOT4O95628 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CNOT4O95628 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CNOT4O95628 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.19■□□□□ 0.02
CNOT4O95628 AL590787.1-201ENST00000568856 1315 ntBASIC15.19■□□□□ 0.02
CNOT4O95628 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CNOT4O95628 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
CNOT4O95628 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CNOT4O95628 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
CNOT4O95628 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CNOT4O95628 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.19■□□□□ 0.02
CNOT4O95628 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.19■□□□□ 0.02
CNOT4O95628 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.19■□□□□ 0.02
CNOT4O95628 MED15P5-201ENST00000423150 992 ntBASIC15.19■□□□□ 0.02
CNOT4O95628 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.19■□□□□ 0.02
CNOT4O95628 PRSS29P-201ENST00000440800 595 ntBASIC15.19■□□□□ 0.02
CNOT4O95628 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.19■□□□□ 0.02
CNOT4O95628 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.19■□□□□ 0.02
CNOT4O95628 PGAM5P1-201ENST00000518923 814 ntBASIC15.19■□□□□ 0.02
CNOT4O95628 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.19■□□□□ 0.02
CNOT4O95628 UNC93B6-202ENST00000528242 690 ntBASIC15.19■□□□□ 0.02
CNOT4O95628 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.19■□□□□ 0.02
CNOT4O95628 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CNOT4O95628 FAM197Y3-203ENST00000618346 717 ntBASIC15.19■□□□□ 0.02
CNOT4O95628 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
CNOT4O95628 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms