Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
PROM1O43490 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.24■□□□□ 0.19
PROM1O43490 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
PROM1O43490 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.24■□□□□ 0.19
PROM1O43490 RNPS1P1-201ENST00000507437 918 ntBASIC16.24■□□□□ 0.19
PROM1O43490 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.24■□□□□ 0.19
PROM1O43490 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 GPALPP1-207ENST00000611650 899 ntBASIC16.24■□□□□ 0.19
PROM1O43490 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.24■□□□□ 0.19
PROM1O43490 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.24■□□□□ 0.19
PROM1O43490 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.24■□□□□ 0.19
PROM1O43490 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.24■□□□□ 0.19
PROM1O43490 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.24■□□□□ 0.19
PROM1O43490 AC046158.3-201ENST00000624947 2558 ntBASIC16.24■□□□□ 0.19
PROM1O43490 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.23■□□□□ 0.19
PROM1O43490 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.23■□□□□ 0.19
PROM1O43490 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.23■□□□□ 0.19
PROM1O43490 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.23■□□□□ 0.19
PROM1O43490 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.23■□□□□ 0.19
PROM1O43490 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.23■□□□□ 0.19
PROM1O43490 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.23■□□□□ 0.19
PROM1O43490 AC079781.3-201ENST00000449110 356 ntBASIC16.23■□□□□ 0.19
PROM1O43490 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.23■□□□□ 0.19
PROM1O43490 FAM197Y8-203ENST00000450145 560 ntBASIC16.23■□□□□ 0.19
PROM1O43490 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.23■□□□□ 0.19
PROM1O43490 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.23■□□□□ 0.19
PROM1O43490 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
PROM1O43490 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.23■□□□□ 0.19
PROM1O43490 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.23■□□□□ 0.19
PROM1O43490 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.23■□□□□ 0.19
PROM1O43490 AL139424.1-201ENST00000607572 797 ntBASIC16.23■□□□□ 0.19
PROM1O43490 AC004706.3-202ENST00000621574 984 ntBASIC16.23■□□□□ 0.19
PROM1O43490 TP73-AS1-207ENST00000624167 988 ntBASIC16.23■□□□□ 0.19
PROM1O43490 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.23■□□□□ 0.19
PROM1O43490 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.23■□□□□ 0.19
PROM1O43490 FRMD8P1-201ENST00000440433 1524 ntBASIC16.23■□□□□ 0.19
PROM1O43490 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.23■□□□□ 0.19
PROM1O43490 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
PROM1O43490 AL118508.1-201ENST00000613502 2345 ntBASIC16.23■□□□□ 0.19
PROM1O43490 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.23■□□□□ 0.19
PROM1O43490 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PROM1O43490 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PROM1O43490 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
PROM1O43490 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PROM1O43490 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PROM1O43490 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PROM1O43490 AC022211.2-201ENST00000585075 2527 ntBASIC16.22■□□□□ 0.19
PROM1O43490 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
PROM1O43490 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PROM1O43490 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PROM1O43490 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PROM1O43490 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PROM1O43490 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PROM1O43490 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PROM1O43490 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PROM1O43490 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PROM1O43490 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
PROM1O43490 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PROM1O43490 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.22■□□□□ 0.19
PROM1O43490 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PROM1O43490 AC073648.2-201ENST00000510116 352 ntBASIC16.22■□□□□ 0.19
PROM1O43490 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
PROM1O43490 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.22■□□□□ 0.19
PROM1O43490 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.22■□□□□ 0.19
PROM1O43490 AC107918.4-202ENST00000641623 219 ntBASIC16.22■□□□□ 0.19
PROM1O43490 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PROM1O43490 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
PROM1O43490 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.22■□□□□ 0.19
PROM1O43490 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms