Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 REXO1L3P-201ENST00000622202 1288 ntBASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 AC068880.1-201ENST00000507289 2297 ntBASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 AC092183.1-201ENST00000469884 875 ntBASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 AP001160.2-201ENST00000596071 487 ntBASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLCF1Q9UBD9 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 AC079781.4-201ENST00000641908 219 ntBASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.16■□□□□ 0.02
CLCF1Q9UBD9 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms