Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 AL773604.1-201ENST00000617417 272 ntBASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 AP002414.3-201ENST00000589352 1468 ntBASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC21.94■■□□□ 1.1
SMC4Q9NTJ3 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 CENPM-204ENST00000402420 688 ntTSL 5 BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 PPIE-208ENST00000470213 927 ntTSL 3 BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 TERC-201ENST00000602385 541 ntBASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC21.93■■□□□ 1.1
SMC4Q9NTJ3 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 AL031284.1-201ENST00000419297 478 ntBASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 AC136632.2-201ENST00000512891 861 ntBASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 AC105339.3-201ENST00000560043 636 ntBASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 SLC25A6P4-201ENST00000586535 553 ntBASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 AL805961.1-202ENST00000641562 540 ntBASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SMC4Q9NTJ3 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SMC4Q9NTJ3 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 PI4KAP1-204ENST00000612579 1703 ntBASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMC4Q9NTJ3 NKILA-202ENST00000614771 2598 ntBASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms