Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 AL645608.8-201ENST00000606034 2086 ntBASIC16.98■□□□□ 0.31
VPS35Q96QK1 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.98■□□□□ 0.31
VPS35Q96QK1 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 RNA5SP415-201ENST00000517246 115 ntBASIC16.98■□□□□ 0.31
VPS35Q96QK1 AC124947.2-201ENST00000547118 1133 ntBASIC16.98■□□□□ 0.31
VPS35Q96QK1 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 AC120114.3-201ENST00000611923 658 ntBASIC16.98■□□□□ 0.31
VPS35Q96QK1 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
VPS35Q96QK1 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS35Q96QK1 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
VPS35Q96QK1 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
VPS35Q96QK1 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS35Q96QK1 PI4KAP1-204ENST00000612579 1703 ntBASIC16.97■□□□□ 0.31
VPS35Q96QK1 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS35Q96QK1 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS35Q96QK1 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.97■□□□□ 0.31
VPS35Q96QK1 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS35Q96QK1 Z83851.2-201ENST00000609564 659 ntBASIC16.97■□□□□ 0.31
VPS35Q96QK1 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS35Q96QK1 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS35Q96QK1 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS35Q96QK1 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.97■□□□□ 0.31
VPS35Q96QK1 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
VPS35Q96QK1 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS35Q96QK1 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS35Q96QK1 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
VPS35Q96QK1 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.96■□□□□ 0.31
VPS35Q96QK1 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
VPS35Q96QK1 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS35Q96QK1 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS35Q96QK1 OR6D1P-203ENST00000641209 4860 ntBASIC16.96■□□□□ 0.31
VPS35Q96QK1 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.96■□□□□ 0.31
VPS35Q96QK1 AC009947.1-201ENST00000444350 727 ntBASIC16.96■□□□□ 0.31
VPS35Q96QK1 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 AC108073.2-201ENST00000464002 357 ntBASIC16.96■□□□□ 0.31
VPS35Q96QK1 AC108751.1-201ENST00000490852 363 ntBASIC16.96■□□□□ 0.31
VPS35Q96QK1 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.96■□□□□ 0.31
VPS35Q96QK1 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS35Q96QK1 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms