Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AP001059.3-201ENST00000619053 235 ntBASIC17.33■□□□□ 0.36
CHFRQ96EP1 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.33■□□□□ 0.36
CHFRQ96EP1 AC084121.4-201ENST00000641598 221 ntBASIC17.33■□□□□ 0.36
CHFRQ96EP1 AF228730.8-201ENST00000642140 221 ntBASIC17.33■□□□□ 0.36
CHFRQ96EP1 AC135050.7-201ENST00000624508 2218 ntBASIC17.33■□□□□ 0.36
CHFRQ96EP1 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.33■□□□□ 0.36
CHFRQ96EP1 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.33■□□□□ 0.36
CHFRQ96EP1 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.33■□□□□ 0.36
CHFRQ96EP1 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.33■□□□□ 0.36
CHFRQ96EP1 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHFRQ96EP1 AC090340.1-201ENST00000620778 4980 ntBASIC17.33■□□□□ 0.36
CHFRQ96EP1 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHFRQ96EP1 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHFRQ96EP1 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHFRQ96EP1 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.33■□□□□ 0.36
CHFRQ96EP1 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.32■□□□□ 0.36
CHFRQ96EP1 SLC22A20-204ENST00000530038 1673 ntBASIC17.32■□□□□ 0.36
CHFRQ96EP1 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHFRQ96EP1 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHFRQ96EP1 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CHFRQ96EP1 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CHFRQ96EP1 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHFRQ96EP1 AC012569.1-201ENST00000591191 1524 ntBASIC17.32■□□□□ 0.36
CHFRQ96EP1 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHFRQ96EP1 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.32■□□□□ 0.36
CHFRQ96EP1 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHFRQ96EP1 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHFRQ96EP1 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHFRQ96EP1 MIR661-201ENST00000384842 89 ntBASIC17.32■□□□□ 0.36
CHFRQ96EP1 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.32■□□□□ 0.36
CHFRQ96EP1 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHFRQ96EP1 AC069262.1-201ENST00000539058 672 ntBASIC17.32■□□□□ 0.36
CHFRQ96EP1 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.32■□□□□ 0.36
CHFRQ96EP1 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.32■□□□□ 0.36
CHFRQ96EP1 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.32■□□□□ 0.36
CHFRQ96EP1 AC138761.1-201ENST00000584393 385 ntBASIC17.32■□□□□ 0.36
CHFRQ96EP1 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.32■□□□□ 0.36
CHFRQ96EP1 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHFRQ96EP1 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CHFRQ96EP1 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.32■□□□□ 0.36
CHFRQ96EP1 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHFRQ96EP1 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.32■□□□□ 0.36
CHFRQ96EP1 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHFRQ96EP1 AC133963.1-201ENST00000504166 1679 ntBASIC17.32■□□□□ 0.36
CHFRQ96EP1 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.32■□□□□ 0.36
CHFRQ96EP1 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHFRQ96EP1 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 AC092474.2-201ENST00000424288 719 ntBASIC17.31■□□□□ 0.36
CHFRQ96EP1 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 SPDYE14P-201ENST00000442619 822 ntBASIC17.31■□□□□ 0.36
CHFRQ96EP1 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
CHFRQ96EP1 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHFRQ96EP1 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CHFRQ96EP1 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.3■□□□□ 0.36
CHFRQ96EP1 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CHFRQ96EP1 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.3■□□□□ 0.36
CHFRQ96EP1 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.3■□□□□ 0.36
CHFRQ96EP1 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.3■□□□□ 0.36
CHFRQ96EP1 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CHFRQ96EP1 AC055876.3-201ENST00000431496 288 ntBASIC17.3■□□□□ 0.36
CHFRQ96EP1 AC067863.1-201ENST00000494933 530 ntBASIC17.3■□□□□ 0.36
CHFRQ96EP1 AC093214.1-201ENST00000511688 1107 ntBASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms