Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 NEFHP1-201ENST00000412845 2629 ntBASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 AL353732.1-201ENST00000569618 1459 ntBASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 AC009118.2-201ENST00000613275 655 ntBASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 AL590560.3-201ENST00000623350 461 ntBASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 AC090340.1-201ENST00000620778 4980 ntBASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SLC44A3Q8N4M1 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.39■□□□□ 0.38
SLC44A3Q8N4M1 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.39■□□□□ 0.38
SLC44A3Q8N4M1 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SLC44A3Q8N4M1 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
SLC44A3Q8N4M1 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SLC44A3Q8N4M1 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.39■□□□□ 0.37
SLC44A3Q8N4M1 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 HCG4-201ENST00000418983 998 ntBASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 RN7SL692P-201ENST00000464677 288 ntBASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SLC44A3Q8N4M1 AC100757.3-201ENST00000622361 1406 ntBASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 144 ms