Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RNF43Q68DV7 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RNF43Q68DV7 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
RNF43Q68DV7 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.98■□□□□ 0.47
RNF43Q68DV7 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RNF43Q68DV7 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF43Q68DV7 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF43Q68DV7 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF43Q68DV7 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RNF43Q68DV7 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF43Q68DV7 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF43Q68DV7 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 AC073621.1-201ENST00000392730 636 ntBASIC17.97■□□□□ 0.47
RNF43Q68DV7 KLF4P1-201ENST00000412782 1185 ntBASIC17.97■□□□□ 0.47
RNF43Q68DV7 AC004967.1-201ENST00000453589 447 ntBASIC17.97■□□□□ 0.47
RNF43Q68DV7 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RNF43Q68DV7 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 AL589182.2-201ENST00000619332 1049 ntBASIC17.97■□□□□ 0.47
RNF43Q68DV7 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RNF43Q68DV7 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF43Q68DV7 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF43Q68DV7 PCDHB19P-201ENST00000570871 2371 ntBASIC17.97■□□□□ 0.47
RNF43Q68DV7 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF43Q68DV7 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.97■□□□□ 0.47
RNF43Q68DV7 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RNF43Q68DV7 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 AC004817.3-201ENST00000602957 2129 ntBASIC17.96■□□□□ 0.47
RNF43Q68DV7 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 AC009336.1-201ENST00000608941 1553 ntBASIC17.96■□□□□ 0.47
RNF43Q68DV7 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF43Q68DV7 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.96■□□□□ 0.47
RNF43Q68DV7 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF43Q68DV7 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.96■□□□□ 0.47
RNF43Q68DV7 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 MYCLP1-201ENST00000372451 1075 ntBASIC17.96■□□□□ 0.47
RNF43Q68DV7 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF43Q68DV7 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF43Q68DV7 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF43Q68DV7 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
RNF43Q68DV7 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.96■□□□□ 0.47
RNF43Q68DV7 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
RNF43Q68DV7 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.96■□□□□ 0.47
RNF43Q68DV7 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
RNF43Q68DV7 HLA-J-201ENST00000462773 1622 ntBASIC17.96■□□□□ 0.47
RNF43Q68DV7 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
RNF43Q68DV7 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF43Q68DV7 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF43Q68DV7 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
RNF43Q68DV7 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
RNF43Q68DV7 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.46
RNF43Q68DV7 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF43Q68DV7 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.95■□□□□ 0.46
RNF43Q68DV7 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF43Q68DV7 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF43Q68DV7 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.95■□□□□ 0.46
RNF43Q68DV7 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RNF43Q68DV7 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
RNF43Q68DV7 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF43Q68DV7 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.95■□□□□ 0.46
RNF43Q68DV7 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
RNF43Q68DV7 UBALD1-205ENST00000590891 2641 ntBASIC17.95■□□□□ 0.46
RNF43Q68DV7 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF43Q68DV7 CROCCP2-202ENST00000412962 2773 ntBASIC17.95■□□□□ 0.46
RNF43Q68DV7 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF43Q68DV7 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RNF43Q68DV7 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF43Q68DV7 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.95■□□□□ 0.46
RNF43Q68DV7 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.95■□□□□ 0.46
RNF43Q68DV7 YBX2P1-201ENST00000394192 760 ntBASIC17.95■□□□□ 0.46
RNF43Q68DV7 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms