Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC15.33■□□□□ 0.05
RNFT1Q5M7Z0 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.33■□□□□ 0.05
RNFT1Q5M7Z0 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
RNFT1Q5M7Z0 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
RNFT1Q5M7Z0 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 AC004449.1-201ENST00000564240 433 ntBASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.33■□□□□ 0.04
RNFT1Q5M7Z0 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 SLC22A20-204ENST00000530038 1673 ntBASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 AL627223.1-201ENST00000416693 442 ntBASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 AC023141.5-201ENST00000458585 616 ntBASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 AC243562.1-201ENST00000560672 389 ntBASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 LINC02084-201ENST00000606069 1096 ntBASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 AL589935.2-201ENST00000616471 1231 ntBASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 AC012569.1-201ENST00000591191 1524 ntBASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
RNFT1Q5M7Z0 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 TFAMP1-201ENST00000412727 736 ntBASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 STK33P1-201ENST00000423835 1218 ntBASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 SPDYE11-202ENST00000450699 704 ntBASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms