Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SF3A1Q15459 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SF3A1Q15459 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SF3A1Q15459 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SF3A1Q15459 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SF3A1Q15459 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SF3A1Q15459 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC19.79■□□□□ 0.76
SF3A1Q15459 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.79■□□□□ 0.76
SF3A1Q15459 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SF3A1Q15459 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
SF3A1Q15459 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.79■□□□□ 0.76
SF3A1Q15459 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SF3A1Q15459 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SF3A1Q15459 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SF3A1Q15459 AC003669.1-201ENST00000334569 611 ntBASIC19.79■□□□□ 0.76
SF3A1Q15459 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
SF3A1Q15459 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
SF3A1Q15459 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
SF3A1Q15459 AP000867.3-201ENST00000524675 377 ntBASIC19.79■□□□□ 0.76
SF3A1Q15459 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SF3A1Q15459 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.79■□□□□ 0.76
SF3A1Q15459 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.79■□□□□ 0.76
SF3A1Q15459 AL445228.2-201ENST00000605589 952 ntBASIC19.79■□□□□ 0.76
SF3A1Q15459 AC069148.1-201ENST00000608741 768 ntBASIC19.79■□□□□ 0.76
SF3A1Q15459 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.79■□□□□ 0.76
SF3A1Q15459 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.79■□□□□ 0.76
SF3A1Q15459 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.79■□□□□ 0.76
SF3A1Q15459 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.79■□□□□ 0.76
SF3A1Q15459 PCDHA14-201ENST00000506751 2298 ntBASIC19.79■□□□□ 0.76
SF3A1Q15459 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.79■□□□□ 0.76
SF3A1Q15459 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC19.79■□□□□ 0.76
SF3A1Q15459 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.79■□□□□ 0.76
SF3A1Q15459 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
SF3A1Q15459 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SF3A1Q15459 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.79■□□□□ 0.76
SF3A1Q15459 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SF3A1Q15459 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SF3A1Q15459 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
SF3A1Q15459 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
SF3A1Q15459 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.78■□□□□ 0.76
SF3A1Q15459 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.78■□□□□ 0.76
SF3A1Q15459 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.78■□□□□ 0.76
SF3A1Q15459 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.78■□□□□ 0.76
SF3A1Q15459 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
SF3A1Q15459 KLF4P1-201ENST00000412782 1185 ntBASIC19.78■□□□□ 0.76
SF3A1Q15459 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SF3A1Q15459 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.78■□□□□ 0.76
SF3A1Q15459 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
SF3A1Q15459 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.78■□□□□ 0.76
SF3A1Q15459 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.78■□□□□ 0.76
SF3A1Q15459 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SF3A1Q15459 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.78■□□□□ 0.76
SF3A1Q15459 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.78■□□□□ 0.76
SF3A1Q15459 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SF3A1Q15459 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.78■□□□□ 0.76
SF3A1Q15459 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC19.78■□□□□ 0.76
SF3A1Q15459 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 AC092068.3-201ENST00000587894 2016 ntBASIC19.78■□□□□ 0.76
SF3A1Q15459 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SF3A1Q15459 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC19.78■□□□□ 0.76
SF3A1Q15459 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.78■□□□□ 0.76
SF3A1Q15459 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.77■□□□□ 0.76
SF3A1Q15459 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SF3A1Q15459 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.77■□□□□ 0.76
SF3A1Q15459 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SF3A1Q15459 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SF3A1Q15459 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
SF3A1Q15459 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SF3A1Q15459 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.77■□□□□ 0.76
SF3A1Q15459 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
SF3A1Q15459 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.77■□□□□ 0.76
SF3A1Q15459 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SF3A1Q15459 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SF3A1Q15459 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SF3A1Q15459 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SF3A1Q15459 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.77■□□□□ 0.76
SF3A1Q15459 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.77■□□□□ 0.76
SF3A1Q15459 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.77■□□□□ 0.76
SF3A1Q15459 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.77■□□□□ 0.76
SF3A1Q15459 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.77■□□□□ 0.76
SF3A1Q15459 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.77■□□□□ 0.76
SF3A1Q15459 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.77■□□□□ 0.76
SF3A1Q15459 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.77■□□□□ 0.76
SF3A1Q15459 AC092119.3-201ENST00000612618 583 ntBASIC19.77■□□□□ 0.76
SF3A1Q15459 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms