Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC233724.13-201ENST00000598383 410 ntBASIC12.16□□□□□ -0.46
PRKDCP78527 AC046185.3-201ENST00000623228 1824 ntBASIC12.16□□□□□ -0.46
PRKDCP78527 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
PRKDCP78527 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC12.16□□□□□ -0.46
PRKDCP78527 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC12.16□□□□□ -0.46
PRKDCP78527 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
PRKDCP78527 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
PRKDCP78527 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 FAM220BP-201ENST00000377689 816 ntBASIC12.16□□□□□ -0.46
PRKDCP78527 IGF1-203ENST00000392904 761 ntTSL 5 BASIC12.16□□□□□ -0.46
PRKDCP78527 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC12.16□□□□□ -0.46
PRKDCP78527 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC12.16□□□□□ -0.46
PRKDCP78527 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
PRKDCP78527 AC092337.1-201ENST00000568699 1129 ntBASIC12.16□□□□□ -0.46
PRKDCP78527 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC12.16□□□□□ -0.46
PRKDCP78527 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC12.16□□□□□ -0.46
PRKDCP78527 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
PRKDCP78527 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
PRKDCP78527 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PRKDCP78527 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PRKDCP78527 BCRP2-202ENST00000447763 634 ntBASIC12.15□□□□□ -0.46
PRKDCP78527 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC12.15□□□□□ -0.46
PRKDCP78527 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
PRKDCP78527 BCRP6-201ENST00000510112 632 ntBASIC12.15□□□□□ -0.46
PRKDCP78527 BCRP7-201ENST00000511549 544 ntBASIC12.15□□□□□ -0.46
PRKDCP78527 NEU3-202ENST00000526068 431 ntTSL 2 BASIC12.15□□□□□ -0.46
PRKDCP78527 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PRKDCP78527 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PRKDCP78527 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC12.15□□□□□ -0.46
PRKDCP78527 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PRKDCP78527 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC12.15□□□□□ -0.46
PRKDCP78527 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PRKDCP78527 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PRKDCP78527 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
PRKDCP78527 AL353732.1-201ENST00000569618 1459 ntBASIC12.15□□□□□ -0.46
PRKDCP78527 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC12.15□□□□□ -0.46
PRKDCP78527 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
PRKDCP78527 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
PRKDCP78527 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC12.15□□□□□ -0.46
PRKDCP78527 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
PRKDCP78527 MPV17-204ENST00000399052 749 ntTSL 4 BASIC12.15□□□□□ -0.46
PRKDCP78527 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PRKDCP78527 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
PRKDCP78527 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC12.15□□□□□ -0.46
PRKDCP78527 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC12.15□□□□□ -0.46
PRKDCP78527 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC12.15□□□□□ -0.46
PRKDCP78527 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PRKDCP78527 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC12.15□□□□□ -0.46
PRKDCP78527 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC12.15□□□□□ -0.46
PRKDCP78527 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC12.15□□□□□ -0.46
PRKDCP78527 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
PRKDCP78527 CHMP4BP1-201ENST00000556017 588 ntBASIC12.15□□□□□ -0.46
PRKDCP78527 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC12.15□□□□□ -0.46
PRKDCP78527 AC005412.3-201ENST00000580309 715 ntBASIC12.15□□□□□ -0.46
PRKDCP78527 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC12.15□□□□□ -0.46
PRKDCP78527 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC12.15□□□□□ -0.46
PRKDCP78527 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
PRKDCP78527 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
PRKDCP78527 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PRKDCP78527 RPL17P11-201ENST00000417593 544 ntBASIC12.14□□□□□ -0.47
PRKDCP78527 AP000812.2-201ENST00000538934 718 ntBASIC12.14□□□□□ -0.47
PRKDCP78527 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PRKDCP78527 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
PRKDCP78527 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PRKDCP78527 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC12.14□□□□□ -0.47
PRKDCP78527 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC12.14□□□□□ -0.47
PRKDCP78527 REEP1-202ENST00000453231 940 ntTSL 2 BASIC12.14□□□□□ -0.47
PRKDCP78527 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC12.14□□□□□ -0.47
PRKDCP78527 FADS2-205ENST00000517839 469 ntTSL 3 BASIC12.14□□□□□ -0.47
PRKDCP78527 AP001258.2-201ENST00000529891 490 ntBASIC12.14□□□□□ -0.47
PRKDCP78527 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC12.14□□□□□ -0.47
PRKDCP78527 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC12.14□□□□□ -0.47
PRKDCP78527 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PRKDCP78527 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PRKDCP78527 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PRKDCP78527 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PRKDCP78527 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
PRKDCP78527 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PRKDCP78527 NUS1P3-201ENST00000423502 862 ntBASIC12.14□□□□□ -0.47
PRKDCP78527 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC12.14□□□□□ -0.47
PRKDCP78527 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PRKDCP78527 AC007551.1-201ENST00000457394 519 ntBASIC12.14□□□□□ -0.47
PRKDCP78527 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC12.14□□□□□ -0.47
PRKDCP78527 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
PRKDCP78527 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC12.14□□□□□ -0.47
PRKDCP78527 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC12.14□□□□□ -0.47
PRKDCP78527 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC12.14□□□□□ -0.47
PRKDCP78527 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PRKDCP78527 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PRKDCP78527 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PRKDCP78527 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC12.14□□□□□ -0.47
PRKDCP78527 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC12.14□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms