Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.88■□□□□ 0.29
SRP54P61011 KRT19P2-202ENST00000557173 1012 ntBASIC16.88■□□□□ 0.29
SRP54P61011 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.88■□□□□ 0.29
SRP54P61011 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SRP54P61011 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.88■□□□□ 0.29
SRP54P61011 AC023141.13-201ENST00000604991 943 ntBASIC16.88■□□□□ 0.29
SRP54P61011 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SRP54P61011 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.88■□□□□ 0.29
SRP54P61011 AC007064.4-201ENST00000637740 555 ntBASIC16.88■□□□□ 0.29
SRP54P61011 AC134684.3-201ENST00000641758 218 ntBASIC16.88■□□□□ 0.29
SRP54P61011 AC079781.4-201ENST00000641908 219 ntBASIC16.88■□□□□ 0.29
SRP54P61011 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SRP54P61011 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SRP54P61011 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.88■□□□□ 0.29
SRP54P61011 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SRP54P61011 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.88■□□□□ 0.29
SRP54P61011 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SRP54P61011 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.88■□□□□ 0.29
SRP54P61011 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SRP54P61011 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SRP54P61011 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
SRP54P61011 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.88■□□□□ 0.29
SRP54P61011 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SRP54P61011 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SRP54P61011 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SRP54P61011 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.87■□□□□ 0.29
SRP54P61011 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SRP54P61011 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SRP54P61011 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
SRP54P61011 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SRP54P61011 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SRP54P61011 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SRP54P61011 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.87■□□□□ 0.29
SRP54P61011 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.87■□□□□ 0.29
SRP54P61011 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
SRP54P61011 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
SRP54P61011 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SRP54P61011 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SRP54P61011 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
SRP54P61011 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SRP54P61011 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.87■□□□□ 0.29
SRP54P61011 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.87■□□□□ 0.29
SRP54P61011 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.87■□□□□ 0.29
SRP54P61011 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.87■□□□□ 0.29
SRP54P61011 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.87■□□□□ 0.29
SRP54P61011 PDPK2P-202ENST00000562415 1191 ntBASIC16.87■□□□□ 0.29
SRP54P61011 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.87■□□□□ 0.29
SRP54P61011 C20orf181-201ENST00000623918 480 ntBASIC16.87■□□□□ 0.29
SRP54P61011 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
SRP54P61011 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SRP54P61011 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.87■□□□□ 0.29
SRP54P61011 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SRP54P61011 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.87■□□□□ 0.29
SRP54P61011 AC012313.1-201ENST00000593393 3059 ntBASIC16.87■□□□□ 0.29
SRP54P61011 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SRP54P61011 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SRP54P61011 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SRP54P61011 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.87■□□□□ 0.29
SRP54P61011 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SRP54P61011 AC025580.3-201ENST00000617932 1424 ntBASIC16.87■□□□□ 0.29
SRP54P61011 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SRP54P61011 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.87■□□□□ 0.29
SRP54P61011 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.86■□□□□ 0.29
SRP54P61011 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SRP54P61011 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.86■□□□□ 0.29
SRP54P61011 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SRP54P61011 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.86■□□□□ 0.29
SRP54P61011 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SRP54P61011 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
SRP54P61011 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.86■□□□□ 0.29
SRP54P61011 AC211486.1-202ENST00000416371 468 ntBASIC16.86■□□□□ 0.29
SRP54P61011 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SRP54P61011 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.86■□□□□ 0.29
SRP54P61011 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.86■□□□□ 0.29
SRP54P61011 AC087163.2-201ENST00000457299 853 ntBASIC16.86■□□□□ 0.29
SRP54P61011 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.86■□□□□ 0.29
SRP54P61011 AC211476.1-201ENST00000503899 468 ntBASIC16.86■□□□□ 0.29
SRP54P61011 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.86■□□□□ 0.29
SRP54P61011 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.86■□□□□ 0.29
SRP54P61011 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
SRP54P61011 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SRP54P61011 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SRP54P61011 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SRP54P61011 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SRP54P61011 AL139384.1-201ENST00000612143 3047 ntBASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms