Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.05■□□□□ 0.48
LIG3P49916 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
LIG3P49916 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LIG3P49916 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.05■□□□□ 0.48
LIG3P49916 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
LIG3P49916 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 KRT17P6-201ENST00000453795 1220 ntBASIC18.05■□□□□ 0.48
LIG3P49916 AC068472.1-201ENST00000474589 881 ntBASIC18.05■□□□□ 0.48
LIG3P49916 AC091607.1-201ENST00000490318 1060 ntBASIC18.05■□□□□ 0.48
LIG3P49916 AC104819.1-201ENST00000504587 486 ntBASIC18.05■□□□□ 0.48
LIG3P49916 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.05■□□□□ 0.48
LIG3P49916 AP005901.3-202ENST00000581653 237 ntBASIC18.05■□□□□ 0.48
LIG3P49916 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
LIG3P49916 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
LIG3P49916 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
LIG3P49916 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LIG3P49916 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LIG3P49916 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIG3P49916 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.04■□□□□ 0.48
LIG3P49916 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 AL603756.1-201ENST00000606511 2163 ntBASIC18.04■□□□□ 0.48
LIG3P49916 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
LIG3P49916 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.04■□□□□ 0.48
LIG3P49916 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LIG3P49916 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.04■□□□□ 0.48
LIG3P49916 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.04■□□□□ 0.48
LIG3P49916 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.04■□□□□ 0.48
LIG3P49916 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.04■□□□□ 0.48
LIG3P49916 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LIG3P49916 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
LIG3P49916 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
LIG3P49916 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
LIG3P49916 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC18.04■□□□□ 0.48
LIG3P49916 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIG3P49916 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
LIG3P49916 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.03■□□□□ 0.48
LIG3P49916 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
LIG3P49916 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.03■□□□□ 0.48
LIG3P49916 AC132938.6-201ENST00000623828 1655 ntBASIC18.03■□□□□ 0.48
LIG3P49916 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 AL096828.2-201ENST00000567259 1965 ntBASIC18.03■□□□□ 0.48
LIG3P49916 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 AL450487.1-201ENST00000426799 995 ntBASIC18.03■□□□□ 0.48
LIG3P49916 AC246785.2-201ENST00000432512 513 ntBASIC18.03■□□□□ 0.48
LIG3P49916 KRT18P65-201ENST00000439811 1286 ntBASIC18.03■□□□□ 0.48
LIG3P49916 NUS1P1-201ENST00000446295 882 ntBASIC18.03■□□□□ 0.48
LIG3P49916 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.03■□□□□ 0.48
LIG3P49916 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.03■□□□□ 0.48
LIG3P49916 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 AL353801.3-201ENST00000609898 542 ntBASIC18.03■□□□□ 0.48
LIG3P49916 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.03■□□□□ 0.48
LIG3P49916 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
LIG3P49916 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
LIG3P49916 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIG3P49916 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms