Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HOXD3P31249 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HOXD3P31249 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
HOXD3P31249 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD3P31249 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
HOXD3P31249 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
HOXD3P31249 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD3P31249 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXD3P31249 METTL26-205ENST00000397666 726 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXD3P31249 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC13.25□□□□□ -0.29
HOXD3P31249 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC13.25□□□□□ -0.29
HOXD3P31249 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC13.25□□□□□ -0.29
HOXD3P31249 SNHG9-202ENST00000564014 471 ntBASIC13.25□□□□□ -0.29
HOXD3P31249 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC13.25□□□□□ -0.29
HOXD3P31249 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXD3P31249 TCAP-202ENST00000578283 583 ntTSL 5 BASIC13.25□□□□□ -0.29
HOXD3P31249 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC13.25□□□□□ -0.29
HOXD3P31249 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXD3P31249 RPS15-207ENST00000591032 550 ntTSL 3 BASIC13.25□□□□□ -0.29
HOXD3P31249 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HOXD3P31249 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD3P31249 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD3P31249 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD3P31249 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC13.25□□□□□ -0.29
HOXD3P31249 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD3P31249 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXD3P31249 LTB4R2-202ENST00000528054 3092 ntBASIC13.25□□□□□ -0.29
HOXD3P31249 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD3P31249 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HOXD3P31249 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD3P31249 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
HOXD3P31249 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXD3P31249 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD3P31249 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
HOXD3P31249 TPR-209ENST00000613151 2478 ntTSL 5 BASIC13.24□□□□□ -0.29
HOXD3P31249 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC13.24□□□□□ -0.29
HOXD3P31249 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 GPR89P-201ENST00000407924 1495 ntBASIC13.24□□□□□ -0.29
HOXD3P31249 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC13.24□□□□□ -0.29
HOXD3P31249 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 KRT18P28-201ENST00000453838 1332 ntBASIC13.24□□□□□ -0.29
HOXD3P31249 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
HOXD3P31249 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXD3P31249 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
HOXD3P31249 METTL21AP1-201ENST00000438852 635 ntBASIC13.24□□□□□ -0.29
HOXD3P31249 ALG1L5P-201ENST00000482043 771 ntBASIC13.24□□□□□ -0.29
HOXD3P31249 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXD3P31249 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 CFL1-202ENST00000524553 860 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXD3P31249 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC13.24□□□□□ -0.29
HOXD3P31249 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC13.24□□□□□ -0.29
HOXD3P31249 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXD3P31249 AC005829.1-201ENST00000570002 483 ntBASIC13.24□□□□□ -0.29
HOXD3P31249 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC13.24□□□□□ -0.29
HOXD3P31249 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
HOXD3P31249 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXD3P31249 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC13.24□□□□□ -0.29
HOXD3P31249 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
HOXD3P31249 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 FER1L4-210ENST00000615531 5998 ntBASIC13.24□□□□□ -0.29
HOXD3P31249 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXD3P31249 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
HOXD3P31249 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
HOXD3P31249 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXD3P31249 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXD3P31249 AC016396.2-201ENST00000562575 1417 ntBASIC13.23□□□□□ -0.29
HOXD3P31249 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
HOXD3P31249 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXD3P31249 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms