Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 FAM220CP-201ENST00000395253 831 ntBASIC13.08□□□□□ -0.32
HLA-DMBP28068 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 AC122714.2-201ENST00000502787 707 ntBASIC13.08□□□□□ -0.32
HLA-DMBP28068 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 AC111152.3-201ENST00000569699 673 ntBASIC13.08□□□□□ -0.32
HLA-DMBP28068 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 AC090616.6-201ENST00000582640 721 ntBASIC13.08□□□□□ -0.32
HLA-DMBP28068 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 STK25P1-201ENST00000585406 838 ntBASIC13.08□□□□□ -0.32
HLA-DMBP28068 AC092329.2-201ENST00000598402 547 ntBASIC13.08□□□□□ -0.32
HLA-DMBP28068 AL353801.3-201ENST00000609898 542 ntBASIC13.08□□□□□ -0.32
HLA-DMBP28068 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 OS9-205ENST00000413095 1660 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 AC008741.2-201ENST00000612792 3115 ntBASIC13.08□□□□□ -0.32
HLA-DMBP28068 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 AL139384.1-201ENST00000612143 3047 ntBASIC13.07□□□□□ -0.32
HLA-DMBP28068 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 TOLLIP-AS1-201ENST00000530897 939 ntBASIC13.07□□□□□ -0.32
HLA-DMBP28068 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 AP005901.3-202ENST00000581653 237 ntBASIC13.07□□□□□ -0.32
HLA-DMBP28068 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 CLEC4GP1-201ENST00000596555 870 ntBASIC13.07□□□□□ -0.32
HLA-DMBP28068 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 FUT8-AS1-201ENST00000621019 1521 ntBASIC13.07□□□□□ -0.32
HLA-DMBP28068 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DMBP28068 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 WT1-209ENST00000530998 2421 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DMBP28068 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms