Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
HLA-DOAP06340 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HLA-DOAP06340 SPDYE10P-202ENST00000612005 668 ntBASIC20.07■□□□□ 0.8
HLA-DOAP06340 SPDYE8P-202ENST00000612377 668 ntBASIC20.07■□□□□ 0.8
HLA-DOAP06340 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
HLA-DOAP06340 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
HLA-DOAP06340 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
HLA-DOAP06340 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HLA-DOAP06340 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 AC023141.5-201ENST00000458585 616 ntBASIC20.06■□□□□ 0.8
HLA-DOAP06340 CYMP-203ENST00000474680 1263 ntBASIC20.06■□□□□ 0.8
HLA-DOAP06340 RN7SL589P-201ENST00000481268 310 ntBASIC20.06■□□□□ 0.8
HLA-DOAP06340 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 RNF34-208ENST00000555076 593 ntTSL 3 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 AC091167.2-201ENST00000579581 588 ntBASIC20.06■□□□□ 0.8
HLA-DOAP06340 AL161645.1-201ENST00000622716 1255 ntBASIC20.06■□□□□ 0.8
HLA-DOAP06340 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
HLA-DOAP06340 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DOAP06340 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HLA-DOAP06340 FOS-208ENST00000555686 1496 ntTSL 2 BASIC20.05■□□□□ 0.8
HLA-DOAP06340 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.05■□□□□ 0.8
HLA-DOAP06340 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HLA-DOAP06340 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HLA-DOAP06340 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
HLA-DOAP06340 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HLA-DOAP06340 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HLA-DOAP06340 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
HLA-DOAP06340 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC20.05■□□□□ 0.8
HLA-DOAP06340 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC20.05■□□□□ 0.8
HLA-DOAP06340 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC20.05■□□□□ 0.8
HLA-DOAP06340 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HLA-DOAP06340 AC004449.1-201ENST00000564240 433 ntBASIC20.05■□□□□ 0.8
HLA-DOAP06340 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HLA-DOAP06340 AC093028.1-201ENST00000622998 982 ntBASIC20.05■□□□□ 0.8
HLA-DOAP06340 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC20.05■□□□□ 0.8
HLA-DOAP06340 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.05■□□□□ 0.8
HLA-DOAP06340 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC20.05■□□□□ 0.8
HLA-DOAP06340 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.05■□□□□ 0.8
HLA-DOAP06340 PKD1P1-201ENST00000458669 6805 ntBASIC20.05■□□□□ 0.8
HLA-DOAP06340 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.05■□□□□ 0.8
HLA-DOAP06340 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HLA-DOAP06340 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC20.05■□□□□ 0.8
HLA-DOAP06340 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 TFAMP1-201ENST00000412727 736 ntBASIC20.04■□□□□ 0.8
HLA-DOAP06340 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 RARRES2P8-201ENST00000566335 367 ntBASIC20.04■□□□□ 0.8
HLA-DOAP06340 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms