Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.59■□□□□ 0.25
LDLRP01130 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.59■□□□□ 0.25
LDLRP01130 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
LDLRP01130 AC009949.1-201ENST00000623048 1830 ntBASIC16.59■□□□□ 0.25
LDLRP01130 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.59■□□□□ 0.25
LDLRP01130 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDLRP01130 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LDLRP01130 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.58■□□□□ 0.25
LDLRP01130 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
LDLRP01130 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.58■□□□□ 0.25
LDLRP01130 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.58■□□□□ 0.25
LDLRP01130 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LDLRP01130 AL603756.1-201ENST00000606511 2163 ntBASIC16.58■□□□□ 0.25
LDLRP01130 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
LDLRP01130 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
LDLRP01130 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LDLRP01130 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
LDLRP01130 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.58■□□□□ 0.25
LDLRP01130 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
LDLRP01130 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.58■□□□□ 0.24
LDLRP01130 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
LDLRP01130 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.58■□□□□ 0.24
LDLRP01130 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.58■□□□□ 0.24
LDLRP01130 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.58■□□□□ 0.24
LDLRP01130 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.58■□□□□ 0.24
LDLRP01130 IGHV3-41-201ENST00000613121 348 ntBASIC16.58■□□□□ 0.24
LDLRP01130 AL773604.1-201ENST00000617417 272 ntBASIC16.58■□□□□ 0.24
LDLRP01130 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.58■□□□□ 0.24
LDLRP01130 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.58■□□□□ 0.24
LDLRP01130 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
LDLRP01130 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.24
LDLRP01130 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.58■□□□□ 0.24
LDLRP01130 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.58■□□□□ 0.24
LDLRP01130 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
LDLRP01130 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.58■□□□□ 0.24
LDLRP01130 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
LDLRP01130 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
LDLRP01130 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
LDLRP01130 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDLRP01130 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.57■□□□□ 0.24
LDLRP01130 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.57■□□□□ 0.24
LDLRP01130 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LDLRP01130 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.57■□□□□ 0.24
LDLRP01130 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDLRP01130 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.57■□□□□ 0.24
LDLRP01130 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
LDLRP01130 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.57■□□□□ 0.24
LDLRP01130 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
LDLRP01130 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
LDLRP01130 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDLRP01130 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.57■□□□□ 0.24
LDLRP01130 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDLRP01130 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
LDLRP01130 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LDLRP01130 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDLRP01130 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.57■□□□□ 0.24
LDLRP01130 IGHV3-47-201ENST00000425060 335 ntBASIC16.57■□□□□ 0.24
LDLRP01130 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.57■□□□□ 0.24
LDLRP01130 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
LDLRP01130 AF238378.1-201ENST00000526806 358 ntBASIC16.57■□□□□ 0.24
LDLRP01130 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.57■□□□□ 0.24
LDLRP01130 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.57■□□□□ 0.24
LDLRP01130 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.57■□□□□ 0.24
LDLRP01130 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.57■□□□□ 0.24
LDLRP01130 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
LDLRP01130 TP73-AS1-207ENST00000624167 988 ntBASIC16.57■□□□□ 0.24
LDLRP01130 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDLRP01130 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
LDLRP01130 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDLRP01130 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDLRP01130 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
LDLRP01130 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDLRP01130 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.57■□□□□ 0.24
LDLRP01130 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDLRP01130 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms