Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 LINC01711-201ENST00000598340 967 ntBASIC19.77■□□□□ 0.76
CTDNEP1O95476 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.77■□□□□ 0.76
CTDNEP1O95476 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTDNEP1O95476 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CTDNEP1O95476 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTDNEP1O95476 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CTDNEP1O95476 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC19.77■□□□□ 0.75
CTDNEP1O95476 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CTDNEP1O95476 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 LINC00895-201ENST00000629028 1637 ntBASIC19.76■□□□□ 0.75
CTDNEP1O95476 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 AC002310.6-201ENST00000624451 1377 ntBASIC19.76■□□□□ 0.75
CTDNEP1O95476 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 LAGE3P1-201ENST00000425356 484 ntBASIC19.76■□□□□ 0.75
CTDNEP1O95476 AC087163.2-201ENST00000457299 853 ntBASIC19.76■□□□□ 0.75
CTDNEP1O95476 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 AC012640.2-201ENST00000561606 901 ntBASIC19.76■□□□□ 0.75
CTDNEP1O95476 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 REXO1L3P-201ENST00000622202 1288 ntBASIC19.76■□□□□ 0.75
CTDNEP1O95476 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.76■□□□□ 0.75
CTDNEP1O95476 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CTDNEP1O95476 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTDNEP1O95476 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTDNEP1O95476 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CTDNEP1O95476 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTDNEP1O95476 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 AL121912.1-201ENST00000603683 238 ntBASIC19.75■□□□□ 0.75
CTDNEP1O95476 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTDNEP1O95476 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTDNEP1O95476 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTDNEP1O95476 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTDNEP1O95476 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
CTDNEP1O95476 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.74■□□□□ 0.75
CTDNEP1O95476 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTDNEP1O95476 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CTDNEP1O95476 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CTDNEP1O95476 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CTDNEP1O95476 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CTDNEP1O95476 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CTDNEP1O95476 TNRC18P3-201ENST00000441896 2691 ntBASIC19.74■□□□□ 0.75
CTDNEP1O95476 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CTDNEP1O95476 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTDNEP1O95476 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CTDNEP1O95476 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.74■□□□□ 0.75
CTDNEP1O95476 FAM197Y8-203ENST00000450145 560 ntBASIC19.74■□□□□ 0.75
CTDNEP1O95476 RN7SL510P-201ENST00000581311 263 ntBASIC19.74■□□□□ 0.75
CTDNEP1O95476 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.74■□□□□ 0.75
CTDNEP1O95476 AC104692.2-201ENST00000603054 253 ntBASIC19.74■□□□□ 0.75
CTDNEP1O95476 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.74■□□□□ 0.75
CTDNEP1O95476 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
CTDNEP1O95476 AL805961.1-202ENST00000641562 540 ntBASIC19.74■□□□□ 0.75
CTDNEP1O95476 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CTDNEP1O95476 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTDNEP1O95476 SNX33P1-201ENST00000592116 1762 ntBASIC19.74■□□□□ 0.75
CTDNEP1O95476 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
CTDNEP1O95476 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms