Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
SIX3O95343 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.74■□□□□ 0.27
SIX3O95343 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SIX3O95343 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.74■□□□□ 0.27
SIX3O95343 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.74■□□□□ 0.27
SIX3O95343 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SIX3O95343 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.74■□□□□ 0.27
SIX3O95343 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SIX3O95343 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
SIX3O95343 POM121L3P-201ENST00000419331 1163 ntBASIC16.74■□□□□ 0.27
SIX3O95343 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.74■□□□□ 0.27
SIX3O95343 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SIX3O95343 SIGLEC30P-201ENST00000455569 941 ntBASIC16.74■□□□□ 0.27
SIX3O95343 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.74■□□□□ 0.27
SIX3O95343 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SIX3O95343 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
SIX3O95343 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.74■□□□□ 0.27
SIX3O95343 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.74■□□□□ 0.27
SIX3O95343 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SIX3O95343 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.74■□□□□ 0.27
SIX3O95343 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.74■□□□□ 0.27
SIX3O95343 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.74■□□□□ 0.27
SIX3O95343 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
SIX3O95343 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.74■□□□□ 0.27
SIX3O95343 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SIX3O95343 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
SIX3O95343 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.74■□□□□ 0.27
SIX3O95343 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.73■□□□□ 0.27
SIX3O95343 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.73■□□□□ 0.27
SIX3O95343 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.73■□□□□ 0.27
SIX3O95343 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
SIX3O95343 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.73■□□□□ 0.27
SIX3O95343 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.73■□□□□ 0.27
SIX3O95343 AL662844.4-201ENST00000606367 2838 ntBASIC16.73■□□□□ 0.27
SIX3O95343 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.73■□□□□ 0.27
SIX3O95343 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 NUS1P2-201ENST00000417358 873 ntBASIC16.73■□□□□ 0.27
SIX3O95343 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 AC012615.1-201ENST00000565797 1299 ntBASIC16.73■□□□□ 0.27
SIX3O95343 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.73■□□□□ 0.27
SIX3O95343 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.73■□□□□ 0.27
SIX3O95343 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SIX3O95343 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SIX3O95343 AC097637.2-201ENST00000624096 1997 ntBASIC16.73■□□□□ 0.27
SIX3O95343 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.73■□□□□ 0.27
SIX3O95343 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
SIX3O95343 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
SIX3O95343 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.72■□□□□ 0.27
SIX3O95343 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SIX3O95343 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
SIX3O95343 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.72■□□□□ 0.27
SIX3O95343 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.72■□□□□ 0.27
SIX3O95343 AL645728.1-201ENST00000366221 2101 ntBASIC16.72■□□□□ 0.27
SIX3O95343 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
SIX3O95343 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
SIX3O95343 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
SIX3O95343 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.72■□□□□ 0.27
SIX3O95343 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.72■□□□□ 0.27
SIX3O95343 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.72■□□□□ 0.27
SIX3O95343 MIR5100-201ENST00000579544 119 ntBASIC16.72■□□□□ 0.27
SIX3O95343 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.72■□□□□ 0.27
SIX3O95343 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.72■□□□□ 0.27
SIX3O95343 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SIX3O95343 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.72■□□□□ 0.27
SIX3O95343 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.72■□□□□ 0.27
SIX3O95343 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
SIX3O95343 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms