Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC15.07■□□□□ 0
LMX1BO60663 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.07■□□□□ 0
LMX1BO60663 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.07■□□□□ 0
LMX1BO60663 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
LMX1BO60663 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
LMX1BO60663 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
LMX1BO60663 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.07■□□□□ 0
LMX1BO60663 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.07■□□□□ 0
LMX1BO60663 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC15.07■□□□□ 0
LMX1BO60663 IGHV3-52-201ENST00000519770 353 ntBASIC15.07■□□□□ 0
LMX1BO60663 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC15.07■□□□□ 0
LMX1BO60663 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.07■□□□□ 0
LMX1BO60663 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC15.07■□□□□ 0
LMX1BO60663 AP005901.3-202ENST00000581653 237 ntBASIC15.07■□□□□ 0
LMX1BO60663 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.07■□□□□ 0
LMX1BO60663 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC15.07■□□□□ 0
LMX1BO60663 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.07■□□□□ 0
LMX1BO60663 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
LMX1BO60663 PCDH8P1-201ENST00000428983 2773 ntBASIC15.07■□□□□ 0
LMX1BO60663 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
LMX1BO60663 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
LMX1BO60663 AL049757.1-201ENST00000616842 1596 ntBASIC15.07■□□□□ 0
LMX1BO60663 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LMX1BO60663 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
LMX1BO60663 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
LMX1BO60663 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.06■□□□□ 0
LMX1BO60663 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.06■□□□□ 0
LMX1BO60663 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
LMX1BO60663 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.06■□□□□ 0
LMX1BO60663 AC078925.2-201ENST00000624013 1973 ntBASIC15.06■□□□□ 0
LMX1BO60663 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
LMX1BO60663 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
LMX1BO60663 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.06■□□□□ 0
LMX1BO60663 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
LMX1BO60663 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 AL031284.1-201ENST00000419297 478 ntBASIC15.06■□□□□ 0
LMX1BO60663 KRT18P67-201ENST00000432816 1264 ntBASIC15.06■□□□□ 0
LMX1BO60663 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.06■□□□□ 0
LMX1BO60663 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.06■□□□□ 0
LMX1BO60663 AC091607.1-201ENST00000490318 1060 ntBASIC15.06■□□□□ 0
LMX1BO60663 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.06■□□□□ 0
LMX1BO60663 KRT18P58-201ENST00000527480 1120 ntBASIC15.06■□□□□ 0
LMX1BO60663 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC15.06■□□□□ 0
LMX1BO60663 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.06■□□□□ 0
LMX1BO60663 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.06■□□□□ 0
LMX1BO60663 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
LMX1BO60663 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
LMX1BO60663 AL138831.2-201ENST00000606564 490 ntBASIC15.06■□□□□ 0
LMX1BO60663 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.06■□□□□ 0
LMX1BO60663 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.06■□□□□ 0
LMX1BO60663 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
LMX1BO60663 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.06■□□□□ 0
LMX1BO60663 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC15.06■□□□□ 0
LMX1BO60663 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC15.06■□□□□ 0
LMX1BO60663 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
LMX1BO60663 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1BO60663 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.06■□□□□ 0
LMX1BO60663 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms